2MMW | pdb_00002mmw

LASSO PEPTIDE BASED INTEGRIN INHIBITOR: MICROCIN J25 VARIANT WITH RGD SUBSTITUTION of GLY12-ILE13-GLY14

PDB DOI: https://doi.org/10.2210/pdb2MMW/pdb
BMRB: 21000

Classification: ANTIBIOTIC
Organism(s): Escherichia coli
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2014-03-20 Released: 2014-05-14
Deposition Author(s): Knappe, T.A., Linne, U., Xie, X., Marahiel, M.A.

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 200
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

wwPDB Validation 3D Report Full Report

Validation slider image for 2MMW

This is version 1.1 of the entry. See complete history.

Literature

Introducing lasso peptides as molecular scaffolds for drug design: engineering of an integrin antagonist.

Knappe, T.A., Manzenrieder, F., Mas-Moruno, C., Linne, U., Sasse, F., Kessler, H., Xie, X., Marahiel, M.A.

(2011) Angew Chem Int Ed Engl 50: 8714-8717

PubMed: 21812076 Search on PubMed
DOI: https://doi.org/10.1002/anie.201102190
Primary Citation Related Structures:
2MMW

Organizational Affiliation

Department of Chemistry/Biochemistry, Philipps-Universität Marburg, Hans-Meerwein-Strasse, 35032 Marburg, Germany.

Macromolecule Content

Total Structure Weight: 2.23 kDa
Atom Count: 158
Modeled Residue Count: 21
Deposited Residue Count: 21
Unique protein chains: 1

Macromolecules

Find similar proteins by: Sequence | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Microcin J25	A	21	Escherichia coli	Mutation(s): 3
UniProt
Find proteins for Q9X2V7 (Escherichia coli) Explore Q9X2V7 Go to UniProtKB: Q9X2V7
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9X2V7
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 200
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

Structure Validation

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Entry History

Deposition Data

Released Date: 2014-05-14

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2014-05-14
Type: Initial release
Version 1.1: 2024-10-30
Changes: Data collection, Database references, Derived calculations, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.