2MJ2 | pdb_00002mj2

Structure of the dimerization domain of the human polyoma, JC virus agnoprotein is an amphipathic alpha-helix.

PDB DOI: https://doi.org/10.2210/pdb2MJ2/pdb
BMRB: 19702

Classification: VIRAL PROTEIN
Organism(s): JC polyomavirus
Mutation(s): No
Membrane Protein: Yes OPM PDBTM

Deposited: 2013-12-23 Released: 2014-04-23
Deposition Author(s): Coric, P., Saribas, S.A., Abou-Gharbia, M., Childers, W., White, M., Bouaziz, S., Safak, M.

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 200
Conformers Submitted: 17
Selection Criteria: structures with the lowest energy

wwPDB Validation 3D Report Full Report

Validation slider image for 2MJ2

This is version 1.2 of the entry. See complete history.

Literature

The structure of the dimerization domain of the human polyoma, JC virus agnoprotein is an amphipathic alpha-helix

Coric, P., Saribas, S.A., Abou-Gharbia, M., Childers, W., White, M., Bouaziz, S., Safak, M.

(2014) J Virol

Macromolecule Content

Total Structure Weight: 4.21 kDa
Atom Count: 296
Modeled Residue Count: 36
Deposited Residue Count: 36
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Agnoprotein	A	36	JC polyomavirus	Mutation(s): 0 Membrane Entity: Yes
UniProt
Find proteins for P03086 (JC polyomavirus) Explore P03086 Go to UniProtKB: P03086
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P03086
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 200
Conformers Submitted: 17
Selection Criteria: structures with the lowest energy

Structure Validation

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Entry History

Deposition Data

Released Date: 2014-04-23

Deposition Author(s):

Abou-Gharbia, M.

Revision History (Full details and data files)

Version 1.0: 2014-04-23
Type: Initial release
Version 1.1: 2023-06-14
Changes: Data collection, Database references, Other
Version 1.2: 2024-05-15
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.