2MHF

Solution structure of the cyclic-nucleotide binding homology domain of a KCNH channel


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 60 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Solution structure of the cyclic-nucleotide binding homology domain of a KCNH channel.

Li, Q.Ng, H.Q.Yoon, H.S.Kang, C.

(2014) J Struct Biol 186: 68-74

  • DOI: https://doi.org/10.1016/j.jsb.2014.03.008
  • Primary Citation of Related Structures:  
    2MHF

  • PubMed Abstract: 

    The carboxy-terminal region of the KCNH family of potassium channels contains a cyclic-nucleotide binding homology domain (CNBHD) that is important for channel gating and trafficking. The solution structure of the CNBHD of the KCNH potassium of zebrafish was determined using solution NMR spectroscopy. This domain exists as a monomer under solution conditions and adopts a similar fold to that determined by X-ray crystallography. The CNBHD does not bind cAMP because residue Y740 blocks the entry of cyclic-nucleotide to the binding pocket. Relaxation results show that the CNBHD is rigid except that some residues in the loop between β6 and β7 are flexible. Our results will be useful to understand the gating mechanism of KCNH family members through the CNBHD.


  • Organizational Affiliation

    Institute of Chemical & Engineering Sciences, Agency for Science, Technology and Research (A∗STAR), Singapore 627833, Singapore.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Uncharacterized protein143Danio rerioMutation(s): 0 
Gene Names: kcnh3
UniProt
Find proteins for A8WHX9 (Danio rerio)
Explore A8WHX9 
Go to UniProtKB:  A8WHX9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA8WHX9
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 60 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

  • Released Date: 2014-04-02 
  • Deposition Author(s): Li, Q., Ng, H.

Revision History  (Full details and data files)

  • Version 1.0: 2014-04-02
    Type: Initial release
  • Version 1.1: 2022-08-24
    Changes: Data collection, Database references