2MC0

Structural Basis of a Thiopeptide Antibiotic Multidrug Resistance System from Streptomyces lividans:Nosiheptide in Complex with TipAS


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation   3D Report Full Report


This is version 3.0 of the entry. See complete history


Literature

Structural basis and dynamics of multidrug recognition in a minimal bacterial multidrug resistance system

Habazettl, J.Allan, M.Jensen, P.R.Sass, H.J.Thompson, C.J.Grzesiek, S.

(2014) Proc Natl Acad Sci U S A 111: E5498-E5507

  • DOI: https://doi.org/10.1073/pnas.1412070111
  • Primary Citation of Related Structures:  
    2MBZ, 2MC0

  • PubMed Abstract: 

    TipA is a transcriptional regulator found in diverse bacteria. It constitutes a minimal autoregulated multidrug resistance system against numerous thiopeptide antibiotics. Here we report the structures of its drug-binding domain TipAS in complexes with promothiocin A and nosiheptide, and a model of the thiostrepton complex. Drug binding induces a large transition from a partially unfolded to a globin-like structure. The structures rationalize the mechanism of promiscuous, yet specific, drug recognition: (i) a four-ring motif present in all known TipA-inducing antibiotics is recognized specifically by conserved TipAS amino acids; and (ii) the variable part of the antibiotic is accommodated within a flexible cleft that rigidifies upon drug binding. Remarkably, the identified four-ring motif is also the major interacting part of the antibiotic with the ribosome. Hence the TipA multidrug resistance mechanism is directed against the same chemical motif that inhibits protein synthesis. The observed identity of chemical motifs responsible for antibiotic function and resistance may be a general principle and could help to better define new leads for antibiotics.


  • Organizational Affiliation

    Focal Area Structural Biology and Biophysics, Biozentrum, University of Basel, CH-4056 Basel, Switzerland; and.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
HTH-type transcriptional activator TipA144Streptomyces lividansMutation(s): 0 
Gene Names: tipA
UniProt
Find proteins for P0A4T9 (Streptomyces lividans)
Explore P0A4T9 
Go to UniProtKB:  P0A4T9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0A4T9
Sequence Annotations
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  • Reference Sequence

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
nosiheptide13Streptomyces actuosusMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
NO1
Query on NO1

Download Ideal Coordinates CCD File 
C [auth B]4-(hydroxymethyl)-3-methyl-1H-indole-2-carboxylic acid
C11 H11 N O3
BSECKLZXEJBFRE-UHFFFAOYSA-N
Modified Residues  4 Unique
IDChains TypeFormula2D DiagramParent
3GL
Query on 3GL
B
L-PEPTIDE LINKINGC5 H9 N O5GLU
BB9
Query on BB9
B
PEPTIDE LINKINGC3 H5 N O2 SCYS
DBU
Query on DBU
B
PEPTIDE LINKINGC4 H7 N O2THR
MH6
Query on MH6
B
PEPTIDE LINKINGC3 H5 N O3SER
Biologically Interesting Molecules (External Reference) 1 Unique
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2014-12-10
    Type: Initial release
  • Version 1.1: 2015-12-09
    Changes: Database references
  • Version 2.0: 2023-06-14
    Changes: Data collection, Database references, Derived calculations, Other, Polymer sequence
  • Version 3.0: 2023-11-15
    Changes: Atomic model, Data collection, Derived calculations