2MB0 | pdb_00002mb0

Solution structure of hnRNP G RRM in complex with the RNA 5'-AUCAAA-3'


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 50 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation 3D Report Full Report

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This is version 1.3 of the entry. See complete history

Literature

Characterization of the RNA recognition mode of hnRNP G extends its role in SMN2 splicing regulation.

Moursy, A.Allain, F.H.Clery, A.

(2014) Nucleic Acids Res 42: 6659-6672

  • DOI: https://doi.org/10.1093/nar/gku244
  • Primary Citation Related Structures: 
    2MB0

  • PubMed Abstract: 

    Regulation of SMN2 exon 7 splicing is crucial for the production of active SMN protein and the survival of Spinal Muscular Atrophy (SMA) patients. One of the most efficient activators of exon 7 inclusion is hnRNP G, which is recruited to the exon by Tra2-β1. We report that in addition to the C-terminal region of hnRNP G, the RNA Recognition Motif (RRM) and the middle part of the protein containing the Arg-Gly-Gly (RGG) box are important for this function. To better understand the mode of action of hnRNP G in this context we determined the structure of its RRM bound to an SMN2 derived RNA. The RRM interacts with a 5'-AAN-3' motif and specifically recognizes the two consecutive adenines. By testing the effect of mutations in hnRNP G RRM and in its putative binding sites on the splicing of SMN2 exon 7, we show that it specifically binds to exon 7. This interaction is required for hnRNP G splicing activity and we propose its recruitment to a polyA tract located upstream of the Tra2-β1 binding site. Finally, our data suggest that hnRNP G plays a major role in the recruitment of the Tra2-β1/hnRNP G/SRSF9 trimeric complex to SMN2 exon 7.


  • Organizational Affiliation
    • Institute for Molecular Biology and Biophysics, Swiss Federal Institute of Technology (ETH), 8093 Zürich, Switzerland.

Macromolecule Content 

  • Total Structure Weight: 12.3 kDa 
  • Atom Count: 855 
  • Modeled Residue Count: 101 
  • Deposited Residue Count: 101 
  • Unique protein chains: 1
  • Unique nucleic acid chains: 1

Macromolecules


Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
RNA-binding motif protein, X chromosomeA [auth B]95Homo sapiensMutation(s): 0 
Gene Names: RBMXHNRPGRBMXP1
UniProt & NIH Common Fund Data Resources
Find proteins for P38159 (Homo sapiens)
Explore P38159 
Go to UniProtKB:  P38159
PHAROS:  P38159
GTEx:  ENSG00000147274 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP38159
Sequence Annotations
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Reference Sequence
Find similar nucleic acids by:  Sequence
Entity ID: 2
MoleculeChains LengthOrganismImage
RNA_(5'-R(*AP*UP*CP*AP*AP*A)-3')B [auth A]6N/A
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 50 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2014-04-09
    Type: Initial release
  • Version 1.1: 2014-05-14
    Changes: Database references
  • Version 1.2: 2014-06-25
    Changes: Database references
  • Version 1.3: 2024-05-01
    Changes: Data collection, Database references