2M6M | pdb_00002m6m

Solution structure of RING domain of E3 ubiquitin ligase Doa10

PDB DOI: https://doi.org/10.2210/pdb2M6M/pdb
BMRB: 19146

Classification: LIGASE
Organism(s): Saccharomyces cerevisiae S288C
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2013-04-06 Released: 2014-05-07
Deposition Author(s): Lim, J., Son, W.

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 1000
Conformers Submitted: 19
Selection Criteria: structures with the lowest energy

wwPDB Validation 3D Report Full Report

Validation slider image for 2M6M

This is version 1.1 of the entry. See complete history.

Literature

Solution structure of RING domain of E3 ubiquitin ligase Doa10

Ahn, H., Lim, J., Son, W.

To be published.

Macromolecule Content

Total Structure Weight: 9.35 kDa
Atom Count: 643
Modeled Residue Count: 83
Deposited Residue Count: 83
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
ERAD-associated E3 ubiquitin-protein ligase DOA10	A	83	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: SSM4, DOA10, YIL030C, YI3299.01C, YI9905.18C EC: 6.3.2 (PDB Primary Data), 2.3.2.27 (UniProt)
UniProt
Find proteins for P40318 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P40318 Go to UniProtKB: P40318
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P40318
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ZN Query on ZN Download:Ideal Coordinates CCD File SDF format, chain C [auth A] SDF format, chain B [auth A] MOL2 format, chain C [auth A] MOL2 format, chain B [auth A] mmCIF format, chain C [auth A] mmCIF format, chain B [auth A]	B [auth A], C [auth A]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain B [auth A] Focus chain C [auth A]

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 1000
Conformers Submitted: 19
Selection Criteria: structures with the lowest energy

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2014-05-07

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2014-05-07
Type: Initial release
Version 1.1: 2024-05-01
Changes: Data collection, Database references, Derived calculations

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.