2LWD | pdb_00002lwd

Solution structure of second CARD of human RIG-I


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 2100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the least restraint violations 

wwPDB Validation 3D Report Full Report

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This is version 1.2 of the entry. See complete history

Literature

Structure and Dynamics of the Second CARD of Human RIG-I Provide Mechanistic Insights into Regulation of RIG-I Activation.

Ferrage, F.Dutta, K.Nistal-Villan, E.Patel, J.R.Sanchez-Aparicio, M.T.De Ioannes, P.Buku, A.Aseguinolaza, G.G.Garcia-Sastre, A.Aggarwal, A.K.

(2012) Structure 20: 2048-2061

  • DOI: https://doi.org/10.1016/j.str.2012.09.003
  • Primary Citation Related Structures: 
    2LWD, 2LWE

  • PubMed Abstract: 

    RIG-I is a cytosolic sensor of viral RNA, comprised of two N-terminal CARDs followed by helicase and C-terminal regulatory domains (helicase-CTD). Viral RNA binds to the helicase-CTD and "exposes" the CARDs for downstream signaling. The role of the second CARD (CARD2) is essential as RIG-I activation requires dephosphorylation of Thr170 followed by ubiquitination at Lys172. Here, we present the solution structure and dynamics of human RIG-I CARD2. Surprisingly, we find that Thr170 is mostly buried. Parallel studies on the phosphomimetic T170E mutant suggest that the loss of function upon Thr170 phosphorylation is likely associated with changes in the CARD1-CARD2 interface that may prevent Lys172 ubiquitination and/or binding to free K63-linked polyubiquitin. We also demonstrate a strong interaction between CARD2 and the helicase-CTD, and show that mutations at the interface result in constitutive activation of RIG-I. Collectively, our data suggests a close interplay between phosphorylation, ubiquitination, and activation of human RIG-I, all mediated by CARD2.


  • Organizational Affiliation
    • Ecole Normale Supérieure, Département de Chimie, UMR 7203 CNRS-UPMC-ENS, 24, rue Lhomond, 75005 Paris, France. fabien.ferrage@ens.fr

Macromolecule Content 

  • Total Structure Weight: 11.78 kDa 
  • Atom Count: 793 
  • Modeled Residue Count: 96 
  • Deposited Residue Count: 100 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Probable ATP-dependent RNA helicase DDX58100Homo sapiensMutation(s): 0 
Gene Names: DDX58
EC: 3.6.4.13
UniProt & NIH Common Fund Data Resources
Find proteins for O95786 (Homo sapiens)
Explore O95786 
Go to UniProtKB:  O95786
PHAROS:  O95786
GTEx:  ENSG00000107201 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO95786
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 2100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the least restraint violations 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2012-10-31
    Type: Initial release
  • Version 1.1: 2012-12-26
    Changes: Database references
  • Version 1.2: 2024-05-01
    Changes: Data collection, Database references