2LV9 | pdb_00002lv9

Solution NMR structure of the PHD domain of human MLL5, Northeast structural genomics consortium target HR6512A

PDB DOI: https://doi.org/10.2210/pdb2LV9/pdb
BMRB: 18559

Classification: TRANSFERASE
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2012-06-29 Released: 2012-09-05
Deposition Author(s): Lemak, A., Yee, A., Houliston, S., Garcia, M., Wu, H., Min, J., Montelione, G.T., Arrowsmith, C., Northeast Structural Genomics Consortium (NESG), Structural Genomics Consortium (SGC), Chaperone-Enabled Studies of Epigenetic Regulation Enzymes (CEBS)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

wwPDB Validation 3D Report Full Report

Validation slider image for 2LV9

This is version 1.2 of the entry. See complete history.

Literature

NMR solution structure of the human MLL5 PHD domain (CASP Target)

Lemak, A., Yee, A., Houliston, S., Garcia, M., Wu, H., Min, J., Montelione, G.T., Arrowsmith, C.

To be published.

Macromolecule Content

Total Structure Weight: 11.65 kDa
Atom Count: 645
Modeled Residue Count: 80
Deposited Residue Count: 98
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Histone-lysine N-methyltransferase MLL5	A	98	Homo sapiens	Mutation(s): 0 Gene Names: MLL5, KMT2E EC: 2.1.1.43
UniProt & NIH Common Fund Data Resources
Find proteins for Q8IZD2 (Homo sapiens) Explore Q8IZD2 Go to UniProtKB: Q8IZD2
PHAROS: Q8IZD2 GTEx: ENSG00000005483
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8IZD2
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ZN Query on ZN Download:Ideal Coordinates CCD File SDF format, chain C [auth A] SDF format, chain B [auth A] MOL2 format, chain C [auth A] MOL2 format, chain B [auth A] mmCIF format, chain C [auth A] mmCIF format, chain B [auth A]	B [auth A], C [auth A]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain B [auth A] Focus chain C [auth A]

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2012-09-05

Deposition Author(s):

Montelione, G.T.

Northeast Structural Genomics Consortium (NESG)

Structural Genomics Consortium (SGC)

Chaperone-Enabled Studies of Epigenetic Regulation Enzymes (CEBS)

Revision History (Full details and data files)

Version 1.0: 2012-09-05
Type: Initial release
Version 1.1: 2012-11-28
Changes: Structure summary
Version 1.2: 2024-05-01
Changes: Data collection, Database references, Derived calculations

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.