2LKQ | pdb_00002lkq

NMR structure of the lambda 5 22-45 peptide


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation 3D Report Full Report

Validation slider image for 2LKQ

This is version 1.4 of the entry. See complete history

Literature

Structural Basis for Galectin-1-dependent Pre-B Cell Receptor (Pre-BCR) Activation.

Elantak, L.Espeli, M.Boned, A.Bornet, O.Bonzi, J.Gauthier, L.Feracci, M.Roche, P.Guerlesquin, F.Schiff, C.

(2012) J Biological Chem 287: 44703-44713

  • DOI: https://doi.org/10.1074/jbc.M112.395152
  • Primary Citation Related Structures: 
    2LKQ

  • PubMed Abstract: 

    During B cell differentiation in the bone marrow, the expression and activation of the pre-B cell receptor (pre-BCR) constitute crucial checkpoints for B cell development. Both constitutive and ligand-dependent pre-BCR activation modes have been described. The pre-BCR constitutes an immunoglobulin heavy chain (Igμ) and a surrogate light chain composed of the invariant λ5 and VpreB proteins. We previously showed that galectin-1 (GAL1), produced by bone marrow stromal cells, is a pre-BCR ligand that induces receptor clustering, leading to efficient pre-BII cell proliferation and differentiation. GAL1 interacts with the pre-BCR via the unique region of λ5 (λ5-UR). Here, we investigated the solution structure of a minimal λ5-UR motif that interacts with GAL1. This motif adopts a stable helical conformation that docks onto a GAL1 hydrophobic surface adjacent to its carbohydrate binding site. We identified key hydrophobic residues from the λ5-UR as crucial for the interaction with GAL1 and for pre-BCR clustering. These residues involved in GAL1-induced pre-BCR activation are different from those essential for autonomous receptor activation. Overall, our results indicate that constitutive and ligand-induced pre-BCR activation could occur in a complementary manner.


  • Organizational Affiliation
    • Laboratoire d'Ingénierie des Systèmes Macromoléculaires, CNRS UMR7255, Aix-Marseille Université, 13402 Marseille cedex 20, France.

Macromolecule Content 

  • Total Structure Weight: 2.86 kDa 
  • Atom Count: 200 
  • Modeled Residue Count: 24 
  • Deposited Residue Count: 24 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:  Sequence   |   3D Structure  
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Immunoglobulin lambda-like polypeptide 124Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P15814 (Homo sapiens)
Explore P15814 
Go to UniProtKB:  P15814
PHAROS:  P15814
GTEx:  ENSG00000128322 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP15814
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2012-10-24
    Type: Initial release
  • Version 1.1: 2012-12-12
    Changes: Database references
  • Version 1.2: 2013-01-16
    Changes: Database references
  • Version 1.3: 2023-06-14
    Changes: Data collection, Database references, Other
  • Version 1.4: 2024-05-15
    Changes: Data collection, Database references