2LJS | pdb_00002ljs

Solution structure of MCoTI-V


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 50 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation 3D Report Full Report

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This is version 2.1 of the entry. See complete history

Literature

Cyclic Peptides Arising by Evolutionary Parallelism via Asparaginyl-Endopeptidase-Mediated Biosynthesis.

Mylne, J.S.Chan, L.Y.Chanson, A.H.Daly, N.L.Schaefer, H.Bailey, T.L.Nguyencong, P.Cascales, L.Craik, D.J.

(2012) Plant Cell 24: 2765-2778

  • DOI: https://doi.org/10.1105/tpc.112.099085
  • Primary Citation Related Structures: 
    2LJS

  • PubMed Abstract: 

    The cyclic miniprotein Momordica cochinchinensis Trypsin Inhibitor II (MCoTI-II) (34 amino acids) is a potent trypsin inhibitor (TI) and a favored scaffold for drug design. We have cloned the corresponding genes and determined that each precursor protein contains a tandem series of cyclic TIs terminating with the more commonly known, and potentially ancestral, acyclic TI. Expression of the precursor protein in Arabidopsis thaliana showed that production of the cyclic TIs, but not the terminal acyclic TI, depends on asparaginyl endopeptidase (AEP) for maturation. The nature of their repetitive sequences and the almost identical structures of emerging TIs suggest these cyclic peptides evolved by internal gene amplification associated with recruitment of AEP for processing between domain repeats. This is the third example of similar AEP-mediated processing of a class of cyclic peptides from unrelated precursor proteins in phylogenetically distant plant families. This suggests that production of cyclic peptides in angiosperms has evolved in parallel using AEP as a constraining evolutionary channel. We believe this is evolutionary evidence that, in addition to its known roles in proteolysis, AEP is especially suited to performing protein cyclization.


  • Organizational Affiliation
    • Institute for Molecular Bioscience, University of Queensland, Brisbane, Queensland 4072, Australia.

Macromolecule Content 

  • Total Structure Weight: 3.32 kDa 
  • Atom Count: 226 
  • Modeled Residue Count: 30 
  • Deposited Residue Count: 30 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Trypsin inhibitor 330Momordica cochinchinensisMutation(s): 1 
UniProt
Find proteins for P82410 (Momordica cochinchinensis)
Explore P82410 
Go to UniProtKB:  P82410
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP82410
Sequence Annotations
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Reference Sequence

Small Molecules

Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
PCA
Query on PCA
A
L-PEPTIDE LINKINGC5 H7 N O3GLN

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 50 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2012-08-08
    Type: Initial release
  • Version 1.1: 2012-09-05
    Changes: Database references
  • Version 1.2: 2018-08-22
    Changes: Data collection, Database references
  • Version 2.0: 2019-12-25
    Changes: Data collection, Database references, Derived calculations, Non-polymer description, Polymer sequence, Structure summary
  • Version 2.1: 2024-10-30
    Changes: Data collection, Database references, Structure summary