2LDX

CHARACTERIZATION OF THE ANTIGENIC SITES ON THE REFINED 3-ANGSTROMS RESOLUTION STRUCTURE OF MOUSE TESTICULAR LACTATE DEHYDROGENASE C4


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.96 Å

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Characterization of the antigenic sites on the refined 3-A resolution structure of mouse testicular lactate dehydrogenase C4.

Hogrefe, H.H.Griffith, J.P.Rossmann, M.G.Goldberg, E.

(1987) J.Biol.Chem. 262: 13155-13162


  • PubMed Abstract: 
  • The atomic structure of mouse testicular apolactate dehydrogenase C4 has been refined to 3.0-A resolution yielding a final crystallographic R-factor of 0.256. Comparison with the refined structure of dogfish apolactate dehydrogenase A4 shows that equ ...

    The atomic structure of mouse testicular apolactate dehydrogenase C4 has been refined to 3.0-A resolution yielding a final crystallographic R-factor of 0.256. Comparison with the refined structure of dogfish apolactate dehydrogenase A4 shows that equivalent secondary structure elements are essentially in the same position relative to the molecular 2-fold axes, except for the helices alpha D, alpha E, and alpha 2G in the vicinity of the active center, and the carboxyl-terminal helix alpha H. The positions of antigenic peptides correlate best with surface accessibilities of the monomer rather than of the full tetrameric molecule.


    Related Citations: 
    • A Crystalline Form of Testes-Specific Lactate Dehydrogenase
      Adams, A.D.,Adams, M.J.,Rossmann, M.G.
      (1973) J.Mol.Biol. 78: 721
    • The Structure of Mouse Testicular Lactate Dehydrogenase Isoenzyme C4 at 2.9 Angstroms Resolution
      Musick, W.D.L.,Rossmann, M.G.
      (1979) J.Biol.Chem. 254: 7611
    • A Low-Resolution Study of Testicular Lactate Dehydrogenase Using the Molecular Replacement Technique
      Musick, W.D.L.,Adams, A.D.,Rossmann, M.G.,Wheat, T.E.,Goldberg, E.
      (1976) J.Mol.Biol. 104: 659


    Organizational Affiliation

    Department of Biochemistry, Molecular Biology, and Cell Biology, Northwestern University, Evanston, Illinois 60201.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
APO-LACTATE DEHYDROGENASE
A, B, C, D
331Mus musculusGene Names: Ldhc (Ldh-3, Ldh3)
EC: 1.1.1.27
Find proteins for P00342 (Mus musculus)
Go to UniProtKB:  P00342
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.96 Å
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 84.800α = 109.70
b = 76.600β = 89.50
c = 63.900γ = 96.50
Software Package:
Software NamePurpose
PROLSQrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 1989-04-19
    Type: Initial release
  • Version 1.1: 2008-03-24
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance