2LBU | pdb_00002lbu

HADDOCK calculated model of Congo red bound to the HET-s amyloid

• PDB DOI: https://doi.org/10.2210/pdb2LBU/pdb

• Classification: PROTEIN FIBRIL
• Organism(s): Podospora anserina
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2011-04-07 Released: 2011-06-01 
• Deposition Author(s): Schutz, A.K., Soragni, A., Hornemann, S., Aguzzi, A., Ernst, M., Bockmann, A., Meier, B.H.

---

Experimental Data Snapshot

• Method: SOLID-STATE NMR
• Conformers Calculated: 200 
• Conformers Submitted: 4 
• Selection Criteria: structures with the lowest energy 

Literature

The Amyloid-Congo Red Interface at Atomic Resolution.

Schutz, A.K., Soragni, A., Hornemann, S., Aguzzi, A., Ernst, M., Bockmann, A., Meier, B.H.

(2011) Angew Chem Int Ed Engl 

• PubMed: 21591034 
• DOI: https://doi.org/10.1002/anie.201008276
• Primary Citation of Related Structures:  
  2LBU

---

Organizational Affiliation: 

Physikalische Chemie, ETH Zürich, 8093 Zürich, Switzerland.

Biological Assembly 1  

Global Symmetry: Helical - H  (Explore in 3D)
Global Stoichiometry: Homo 5-mer - A5 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 44.03 kDa 
• Atom Count: 2,811 
• Modeled Residue Count: 355 
• Deposited Residue Count: 395 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Small s protein	A, B, C, D, E	79	Podospora anserina	Mutation(s): 0
UniProt
Find proteins for Q03689 (Podospora anserina) Explore Q03689  Go to UniProtKB:  Q03689

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
CGO	F [auth B]	sodium 3,3'-(1E,1'E)-biphenyl-4,4'-diylbis(diazene-2,1-diyl)bis(4-aminonaphthalene-1-sulfonate) C32 H22 N6 Na2 O6 S2 IQFVPQOLBLOTPF-HKXUKFGYSA-L

Experimental Data & Validation

Experimental Data

• Method: SOLID-STATE NMR
• Conformers Calculated: 200 
• Conformers Submitted: 4 
• Selection Criteria: structures with the lowest energy 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2011-06-01 
Deposition Author(s): Schutz, A.K., Soragni, A., Hornemann, S., Aguzzi, A., Ernst, M., Bockmann, A., Meier, B.H.

Revision History  

• Version 1.0: 2011-06-01
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2024-05-01
  Changes: Data collection, Database references, Derived calculations
• Version 2.0: 2024-11-20
  Changes: Advisory, Atomic model, Data collection, Experimental preparation, Structure summary