Biological Assembly 1  

 3D View: Structure | 1D-3D View | Validation Report

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 13.19 kDa 
• Atom Count: 750 
• Modelled Residue Count: 91 
• Deposited Residue Count: 114 
• Unique protein chains: 2

2LAS

Molecular Determinants of Paralogue-Specific SUMO-SIM Recognition

• PDB DOI: 10.2210/pdb2LAS/pdb
• BMRB: 17536

• Classification: TRANSCRIPTION
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2011-03-20 Released: 2011-12-14 
• Deposition Author(s): Namanja, A., Li, Y., Su, Y., Wong, S., Lu, J., Colson, L., Wu, C., Li, S., Chen, Y.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 200 
• Conformers Submitted: 10 
• Selection Criteria: all calculated structures submitted 

Literature

Insights into High Affinity Small Ubiquitin-like Modifier (SUMO) Recognition by SUMO-interacting Motifs (SIMs) Revealed by a Combination of NMR and Peptide Array Analysis.

Namanja, A.T., Li, Y.J., Su, Y., Wong, S., Lu, J., Colson, L.T., Wu, C., Li, S.S., Chen, Y.

(2012) J Biol Chem 287: 3231-3240

• PubMed: 22147707 
• DOI: 10.1074/jbc.M111.293118
• Primary Citation of Related Structures:  
  2LAS


• PubMed Abstract: 
  

The small ubiquitin-like modifiers (SUMOs) regulate many essential cellular functions. Only one type of SUMO-interacting motif (SIM) has been identified that can extend the β-sheet of SUMO as either a parallel or an antiparallel strand. The molecular determinants of the bound orientation and paralogue specificity of a SIM are unclear. To address this question, we have conducted structural studies of SUMO1 in complex with a SUMO1-specific SIM that binds to SUMO1 with high affinity without post-translational modifications using nuclear magnetic resonance methods. In addition, the SIM sequence requirements have been investigated by peptide arrays in comparison with another high affinity SIM that binds in the opposing orientation. We found that antiparallel binding SIMs tolerate more diverse sequences, whereas the parallel binding SIMs prefer the more strict sequences consisting of (I/V)DLT that have a preference in high affinity SUMO2 and -3 binding. Comparison of two high affinity SUMO1-binding SIMs that bind in opposing orientations has revealed common SUMO1-specific interactions needed for high affinity binding. This study has significantly advanced our understanding of the molecular determinants underlining SUMO-SIM recognition.

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Organizational Affiliation: 

Department of Molecular Medicine, Beckman Research Institute of City of Hope, Duarte, California 91010, USA.

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ubiquitin-related modifier 1	A	101	Homo sapiens	Mutation(s): 0  Gene Names: OK/SW-cl.43, SMT3C, SMT3H3, SUMO1, UBL1
UniProt & NIH Common Fund Data Resources
Find proteins for P63165 (Homo sapiens) Explore P63165  Go to UniProtKB:  P63165
PHAROS:  P63165 GTEx:  ENSG00000116030

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
M-IR2_peptide	B	13	Homo sapiens	Mutation(s): 0  Gene Names: RANBP2, NUP358 EC: 2.3.2
UniProt & NIH Common Fund Data Resources
Find proteins for P49792 (Homo sapiens) Explore P49792  Go to UniProtKB:  P49792
PHAROS:  P49792 GTEx:  ENSG00000153201

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 200 
• Conformers Submitted: 10 
• Selection Criteria: all calculated structures submitted 
• OLDERADO: 2LAS Olderado

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2011-03-20 
• Released Date: 2011-12-14 
Deposition Author(s): Namanja, A., Li, Y., Su, Y., Wong, S., Lu, J., Colson, L., Wu, C., Li, S., Chen, Y.

Revision History  

• Version 1.0: 2011-12-14
  Type: Initial release
  
• Version 1.1: 2012-02-15
  Changes: Database references
• Version 1.2: 2016-04-27
  Changes: Structure summary