2L9Z | pdb_00002l9z

Zinc knuckle in PRDM4

• PDB DOI: https://doi.org/10.2210/pdb2L9Z/pdb
• BMRB: 17494

• Classification: TRANSCRIPTION
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2011-02-26 Released: 2011-04-27 
• Deposition Author(s): Briknarova, K., Atwater, D.Z., Glicken, J.M., Maynard, S.J., Ness, T.E.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 10 
• Conformers Submitted: 10 
• Selection Criteria: all calculated structures submitted 

Literature

The PR/SET domain in PRDM4 is preceded by a zinc knuckle.

Briknarova, K., Atwater, D.Z., Glicken, J.M., Maynard, S.J., Ness, T.E.

(2011) Proteins 79: 2341-2345

• PubMed: 21604305 
• DOI: https://doi.org/10.1002/prot.23057
• Primary Citation Related Structures: 
  2L9Z

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Organizational Affiliation: 
• Department of Chemistry and Biochemistry, The University of Montana, Missoula, Montana 59812, USA. [e-mail]

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 4.38 kDa 
• Atom Count: 302 
• Modeled Residue Count: 39 
• Deposited Residue Count: 39 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
PR domain zinc finger protein 4	A	39	Homo sapiens	Mutation(s): 0  Gene Names: PRDM4, PFM1 EC: 2.1.1
UniProt & NIH Common Fund Data Resources
Find proteins for Q9UKN5 (Homo sapiens) Explore Q9UKN5  Go to UniProtKB:  Q9UKN5
PHAROS:  Q9UKN5 GTEx:  ENSG00000110851

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
ZN	B [auth A]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 10 
• Conformers Submitted: 10 
• Selection Criteria: all calculated structures submitted 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2011-04-27 
Deposition Author(s): Briknarova, K., Atwater, D.Z., Glicken, J.M., Maynard, S.J., Ness, T.E.

Revision History  

• Version 1.0: 2011-04-27
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2024-05-01
  Changes: Data collection, Database references, Derived calculations