2L6K | pdb_00002l6k

Solution Structure of a Nonphosphorylated Peptide Recognizing Domain

• PDB DOI: https://doi.org/10.2210/pdb2L6K/pdb
• BMRB: 17314

• Classification: PROTEIN BINDING
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2010-11-22 Released: 2011-10-12 
• Deposition Author(s): Dai, K., Liao, S., Zhang, J., Zhang, X., Tu, X.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 200 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 

Literature

Solution structure of Tensin2 SH2 domain and its phosphotyrosine-independent interaction with DLC-1

Dai, K., Liao, S., Zhang, J., Zhang, X., Tu, X.

(2011) PLoS One 6: e21965-e21965

• PubMed: 21765928 
• DOI: https://doi.org/10.1371/journal.pone.0021965
• Primary Citation Related Structures: 
  2L6K


• PubMed Abstract: 
  

  Src homology 2 (SH2) domain is a conserved module involved in various biological processes. Tensin family member was reported to be involved in tumor suppression by interacting with DLC-1 (deleted-in-liver-cancer-1) via its SH2 domain. We explore here the important questions that what the structure of tensin2 SH2 domain is, and how it binds to DLC-1, which might reveal a novel binding mode. Tensin2 SH2 domain adopts a conserved SH2 fold that mainly consists of five β-strands flanked by two α-helices. Most SH2 domains recognize phosphorylated ligands specifically. However, tensin2 SH2 domain was identified to interact with nonphosphorylated ligand (DLC-1) as well as phosphorylated ligand. We determined the solution structure of tensin2 SH2 domain using NMR spectroscopy, and revealed the interactions between tensin2 SH2 domain and its ligands in a phosphotyrosine-independent manner.

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Organizational Affiliation: 
• Hefei National Laboratory for Physical Sciences at Microscale, School of Life Sciences, University of Science and Technology of China, Hefei, Anhui, People's Republic of China.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 13.69 kDa 
• Atom Count: 888 
• Modeled Residue Count: 115 
• Deposited Residue Count: 123 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Tensin-like C1 domain-containing phosphatase	A	123	Homo sapiens	Mutation(s): 0  EC: 3.1.3.48
UniProt & NIH Common Fund Data Resources
Find proteins for Q63HR2 (Homo sapiens) Explore Q63HR2  Go to UniProtKB:  Q63HR2
PHAROS:  Q63HR2 GTEx:  ENSG00000111077

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 200 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2011-10-12 
Deposition Author(s): Dai, K., Liao, S., Zhang, J., Zhang, X., Tu, X.

Revision History  

• Version 1.0: 2011-10-12
  Type: Initial release
  
• Version 1.1: 2020-02-26
  Changes: Database references, Other
• Version 1.2: 2023-06-14
  Changes: Database references, Other
• Version 1.3: 2024-05-15
  Changes: Data collection, Database references