2L24

Antimicrobial peptide

• PDB DOI: https://doi.org/10.2210/pdb2L24/pdb

• Classification: ANTIMICROBIAL PROTEIN
• Organism(s): Influenza A virus
• Mutation(s): Yes 
• Membrane Protein: Yes  OPM


• Deposited: 2010-08-10 Released: 2011-06-22 
• Deposition Author(s): Zhu, S., Aumelas, A., Gao, B.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 10 
• Selection Criteria: target function 

Literature

Convergent evolution-guided design of antimicrobial peptides derived from influenza A virus hemagglutinin.

Zhu, S., Aumelas, A., Gao, B.

(2011) J Med Chem 54: 1091-1095

• PubMed: 21222457 
• DOI: https://doi.org/10.1021/jm1010463
• Primary Citation of Related Structures:  
  2L24


• PubMed Abstract: 
  

  Antimicrobial activity and solution structures of four 13-amino acid peptides derived from the fusion domain of viral hemagglutinin proteins are presented. The results show that carboxyl-terminal amidation is a key factor to switch a viral fusion domain-derived sequence into an antimicrobial peptide. Optimization of amphiphilic balance on the amidated analogue largely improves efficacy and enlarges antimicrobial spectra of these peptides. Our work indicates that viral fusion domains have potential to be engineered into potent antimicrobial peptides.

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Organizational Affiliation: 

Group of Animal Innate Immunity, State Key Laboratory of Integrated Management of Pest Insects and Rodents, Institute of Zoology, Chinese Academy of Sciences, 1 Beichen West Road, Chaoyang District, Beijing 100101, China. [e-mail]

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 1.45 kDa 
• Atom Count: 104 
• Modelled Residue Count: 14 
• Deposited Residue Count: 14 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hemagglutinin	A	14	Influenza A virus	Mutation(s): 1  Membrane Entity: Yes
UniProt
Find proteins for Q6PP25 (Influenza A virus) Explore Q6PP25  Go to UniProtKB:  Q6PP25

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 10 
• Selection Criteria: target function 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2011-06-22 
Deposition Author(s): Zhu, S., Aumelas, A., Gao, B.

Revision History  

• Version 1.0: 2011-06-22
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance