2KQ0 | pdb_00002kq0

Human NEDD4 3rd WW Domain Complex with Ebola Zaire Virus Matrix Protein VP40 Derived Peptide ILPTAPPEYMEA

• PDB DOI: https://doi.org/10.2210/pdb2KQ0/pdb
• BMRB: 16575

• Classification: LIGASE
• Organism(s): Homo sapiens, HTLV-1 isolate Mel 15
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2009-10-23 Released: 2010-11-03 
• Deposition Author(s): Iglesias-Bexiga, M., Macias, M., Bonet, R., Blanco, F.J., Cobos, E.S., Luque, I.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 120 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 

Literature

Human NEDD4 3rd WW Domain Complex with Ebola Zaire Virus Matrix Protein VP40 Derived Peptide

Iglesias-Bexiga, M.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 1 generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 6.91 kDa 
• Atom Count: 369 
• Modeled Residue Count: 44 
• Deposited Residue Count: 61 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
E3 ubiquitin-protein ligase NEDD4	A	49	Homo sapiens	Mutation(s): 0  Gene Names: NEDD4 EC: 6.3.2 (PDB Primary Data), 2.3.2.26 (UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for P46934 (Homo sapiens) Explore P46934  Go to UniProtKB:  P46934
PHAROS:  P46934 GTEx:  ENSG00000069869

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
12-mer from Matrix protein VP40	B	12	HTLV-1 isolate Mel 15	Mutation(s): 0
UniProt
Find proteins for Q05128 (Zaire ebolavirus (strain Mayinga-76)) Explore Q05128  Go to UniProtKB:  Q05128

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 120 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2010-11-03 
Deposition Author(s): Iglesias-Bexiga, M., Macias, M., Bonet, R., Blanco, F.J., Cobos, E.S., Luque, I.

Revision History  

• Version 1.0: 2010-11-03
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2020-02-26
  Changes: Data collection, Database references, Other
• Version 1.3: 2024-05-01
  Changes: Data collection, Database references