2KP5 | pdb_00002kp5

NMR structure of Hahellin, a beta-gamma crystallin


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 20 
  • Selection Criteria: target function 

wwPDB Validation 3D Report Full Report

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This is version 1.3 of the entry. See complete history

Literature

A natively unfolded beta gamma-crystallin domain from Hahella chejuensis.

Srivastava, A.K.Sharma, Y.Chary, K.V.

(2010) Biochemistry 49: 9746-9755

  • DOI: https://doi.org/10.1021/bi101000m
  • Primary Citation Related Structures: 
    2KP5

  • PubMed Abstract: 

    To date, very few βγ-crystallins have been identified and structurally characterized. Several of them have been shown to bind Ca(2+) and thereby enhance their stability without any significant change in structure. Although Ca(2+)-induced conformational changes have been reported in two putative βγ-crystallins from Caulobacter crescentus and Yersinia pestis, they are shown to be partially unstructured, and whether they acquire a βγ-crystallin fold is not known. We describe here a βγ-crystallin domain, hahellin, its Ca(2+) binding properties and NMR structure. Unlike any other βγ-crystallin, hahellin is characterized as a pre-molten globule (PMG) type of natively unfolded protein domain. It undergoes drastic conformational change and acquires a typical βγ-crystallin fold upon Ca(2+) binding and hence acts as a Ca(2+)-regulated conformational switch. However, it does not bind Mg(2+). The intrinsically disordered Ca(2+)-free state and the close structural similarity of Ca(2+)-bound hahellin to a microbial βγ-crystallin homologue, Protein S, which shows Ca(2+)-dependent stress response, make it a potential candidate for the cellular functions. This study indicates the presence of a new class of natively unfolded βγ-crystallins and therefore the commencement of the possible functional roles of such proteins in this superfamily.


  • Organizational Affiliation
    • Department of Chemical Sciences, Tata Institute of Fundamental Research, Mumbai 400005, India.

Macromolecule Content 

  • Total Structure Weight: 10.26 kDa 
  • Atom Count: 712 
  • Modeled Residue Count: 91 
  • Deposited Residue Count: 92 
  • Unique protein chains: 1

Macromolecules

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Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Putative uncharacterized protein92Hahella chejuensis KCTC 2396Mutation(s): 0 
Gene Names: HCH_03072
UniProt
Find proteins for Q2SHN6 (Hahella chejuensis (strain KCTC 2396))
Explore Q2SHN6 
Go to UniProtKB:  Q2SHN6
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ2SHN6
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 20 
  • Selection Criteria: target function 

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2010-11-10
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2024-05-01
    Changes: Data collection, Database references
  • Version 1.3: 2025-05-07
    Changes: Database references, Structure summary