2KOY | pdb_00002koy

Structure of the E1064A mutant of the N-domain of Wilson Disease Associated Protein


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 1000 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation 3D Report Full Report

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This is version 1.4 of the entry. See complete history

Literature

Difference in stability of the N-domain underlies distinct intracellular properties of the E1064A and H1069Q mutants of copper-transporting ATPase ATP7B.

Dmitriev, O.Y.Bhattacharjee, A.Nokhrin, S.Uhlemann, E.M.Lutsenko, S.

(2011) J Biological Chem 286: 16355-16362

  • DOI: https://doi.org/10.1074/jbc.M110.198101
  • Primary Citation Related Structures: 
    2KOY

  • PubMed Abstract: 

    Wilson disease (WD) is a disorder of copper metabolism caused by mutations in the Cu-transporting ATPase ATP7B. WD is characterized by significant phenotypic variability, the molecular basis of which is poorly understood. The E1064A mutation in the N-domain of ATP7B was previously shown to disrupt ATP binding. We have now determined, by NMR, the structure of the N-domain containing this mutation and compared properties of E1064A and H1069Q, another mutant with impaired ATP binding. The E1064A mutation does not change the overall fold of the N-domain. However, the position of the α1,α2-helical hairpin (α-HH) that houses Glu(1064) and His(1069) is altered. The α-HH movement produces a more open structure compared with the wild-type ATP-bound form and misaligns ATP coordinating residues, thus explaining complete loss of ATP binding. In the cell, neither the stability nor targeting of ATP7B-E1064A to the trans-Golgi network differs significantly from the wild type. This is in a contrast to the H1069Q mutation within the same α-HH, which greatly destabilizes protein both in vitro and in cells. The difference between two mutants can be linked to a lower stability of the α-HH in the H1069Q variant at the physiological temperature. We conclude that the structural stability of the N-domain rather than the loss of ATP binding plays a defining role in the ability of ATP7B to reach the trans-Golgi network, thus contributing to phenotypic variability in WD.


  • Organizational Affiliation
    • Department of Biochemistry, University of Saskatchewan, Saskatoon, Saskatchewan, Canada. oleg.dmitriev@usask.ca

Macromolecule Content 

  • Total Structure Weight: 14.75 kDa 
  • Atom Count: 1,026 
  • Modeled Residue Count: 141 
  • Deposited Residue Count: 141 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Copper-transporting ATPase 2141Homo sapiensMutation(s): 1 
Gene Names: ATP7BPWDWC1WND
EC: 3.6.3.4 (PDB Primary Data), 7.2.2.8 (UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for P35670 (Homo sapiens)
Explore P35670 
Go to UniProtKB:  P35670
PHAROS:  P35670
GTEx:  ENSG00000123191 
Entity Groups
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UniProt GroupP35670
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 1000 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2010-12-15
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2019-03-13
    Changes: Data collection, Database references
  • Version 1.3: 2021-10-13
    Changes: Database references
  • Version 1.4: 2024-05-22
    Changes: Data collection