2KO0

Solution structure of the THAP zinc finger of THAP1 in complex with its DNA target

Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 15 
  • Selection Criteria: structures with the least restraint violations 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history. 


Literature

Structural determinants of specific DNA-recognition by the THAP zinc finger

Campagne, S., Saurel, O., Gervais, V., Milon, A.

(2010) Nucleic Acids Res 

  • DOI: 10.1093/nar/gkq053
  • Primary Citation of Related Structures:  
    2KO0

  • PubMed Abstract: 

    • Human THAP1 is the prototype of a large family of cellular factors sharing an original THAP zinc-finger motif responsible for DNA binding. Human THAP1 regulates endothelial cell proliferation and G1/S cell-cycle progression, through modulation of pRb/E2F cell-cycle target genes including rrm1 ...

    Human THAP1 is the prototype of a large family of cellular factors sharing an original THAP zinc-finger motif responsible for DNA binding. Human THAP1 regulates endothelial cell proliferation and G1/S cell-cycle progression, through modulation of pRb/E2F cell-cycle target genes including rrm1. Recently, mutations in THAP1 have been found to cause DYT6 primary torsion dystonia, a human neurological disease. We report here the first 3D structure of the complex formed by the DNA-binding domain of THAP1 and its specific DNA target (THABS) found within the rrm1 target gene. The THAP zinc finger uses its double-stranded beta-sheet to fill the DNA major groove and provides a unique combination of contacts from the beta-sheet, the N-terminal tail and surrounding loops toward the five invariant base pairs of the THABS sequence. Our studies reveal unprecedented insights into the specific DNA recognition mechanisms within this large family of proteins controlling cell proliferation, cell cycle and pluripotency.

    Organizational Affiliation: 

    CNRS, Institut de Pharmacologie et de Biologie Structurale and Université de Toulouse, UPS, F-31077 Toulouse, France.



Macromolecules

Find similar proteins by: 
(by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
THAP domain-containing protein 1A87Homo sapiensMutation(s): 2 
Gene Names: THAP1
Find proteins for Q9NVV9 (Homo sapiens)
Explore Q9NVV9 
Go to UniProtKB:  Q9NVV9
NIH Common Fund Data Resources
PHAROS:  Q9NVV9
GTEx:  ENSG00000131931
Protein Feature View
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  • Reference Sequence
  • Find similar nucleic acids by:  Sequence   |   Structure
    • Entity ID: 2
    MoleculeChainsLengthOrganismImage
    RRM1B16N/A
    • Find similar nucleic acids by:  Sequence   |   Structure
      • Entity ID: 3
      MoleculeChainsLengthOrganismImage
      ZINC IONC16N/A
      Small Molecules
      Ligands 1 Unique
      IDChainsName / Formula / InChI Key2D Diagram3D Interactions
      ZN
      Query on ZN
      Download Ideal Coordinates CCD File 
      		 D [auth A]ZINC ION
      Zn
      PTFCDOFLOPIGGS-UHFFFAOYSA-N      		 Ligand Interaction
      Experimental Data & Validation

      Experimental Data

      • Method: SOLUTION NMR
      • Conformers Calculated: 200 
      • Conformers Submitted: 15 
      • Selection Criteria: structures with the least restraint violations 
      • OLDERADO: 2KO0 Olderado

      Structure Validation

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      View more in-depth experimental data

      Entry History 

      Deposition Data

      Revision History  (Full details and data files)

      • Version 1.0: 2010-01-19
        Type: Initial release
      • Version 1.1: 2011-07-13
        Changes: Version format compliance