2KGO

Solution NMR structure of Zn finger protein YBIL from Escherichia coli. NESG target ET107, OCSP target EC0402

• PDB DOI: https://doi.org/10.2210/pdb2KGO/pdb
• BMRB: 16214

• Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
• Organism(s): Escherichia coli K-12
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2009-03-13 Released: 2009-03-31 
• Deposition Author(s): Gutmanas, A., Yee, A., Lemak, A., Fares, C., Guido, V., Arrowsmith, C.H., Northeast Structural Genomics Consortium (NESG), Ontario Centre for Structural Proteomics (OCSP)

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 

Literature

Zn-finger protein YBIL from E. coli

Gutmanas, A., Yee, A., Lemak, A., Fares, C., Arrowsmith, C.H.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 12.01 kDa 
• Atom Count: 682 
• Modelled Residue Count: 88 
• Deposited Residue Count: 108 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Uncharacterized protein ybiI	A	108	Escherichia coli K-12	Mutation(s): 0  Gene Names: b0803, JW0788, ybiI, ybil
UniProt
Find proteins for P41039 (Escherichia coli (strain K12)) Explore P41039  Go to UniProtKB:  P41039

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
ZN	B [auth A]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2009-03-31 
Deposition Author(s): Gutmanas, A., Yee, A., Lemak, A., Fares, C., Guido, V., Arrowsmith, C.H., Northeast Structural Genomics Consortium (NESG), Ontario Centre for Structural Proteomics (OCSP)

Revision History  

• Version 1.0: 2009-03-31
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Source and taxonomy, Version format compliance
• Version 1.2: 2020-02-26
  Changes: Data collection, Database references, Other
• Version 1.3: 2023-06-14
  Changes: Database references, Derived calculations, Other
• Version 1.4: 2024-05-08
  Changes: Data collection, Database references