Biological Assembly 1  

 3D View: Structure | 1D-3D View | Validation Report

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 3.51 kDa 
• Atom Count: 247 
• Modelled Residue Count: 32 
• Deposited Residue Count: 32 
• Unique protein chains: 1

2KEG

NMR structure of Plantaricin K in DPC-micelles

• PDB DOI: 10.2210/pdb2KEG/pdb
• BMRB: 16148

• Classification: ANTIMICROBIAL PROTEIN
• Organism(s): Lactiplantibacillus plantarum
• Mutation(s): No 


• Deposited: 2009-01-30 Released: 2009-07-07 
• Deposition Author(s): Rogne, P., Haugen, M., Fimland, G., Nissen-Meyer, J., Kristiansen, P.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 

Literature

Three-dimensional structure of the two-peptide bacteriocin plantaricin JK.

Rogne, P., Haugen, C., Fimland, G., Nissen-Meyer, J., Kristiansen, P.E.

(2009) Peptides 30: 1613-1621

• PubMed: 19538999 
• DOI: 10.1016/j.peptides.2009.06.010
• Primary Citation of Related Structures:  
  2KEG, 2KEH, 2KHF, 2KHG


• PubMed Abstract: 
  

The three-dimensional structures of the two peptides, PlnJ and PlnK, that constitutes the two-peptide bacteriocin plantaricin JK have been solved in water/TFE and water/DPC-micellar solutions using nuclear magnetic resonance (NMR) spectroscopy. PlnJ, a 25 residue peptide, has an N-terminal amphiphilic alpha-helix between Trp-3 and Tyr-15. The 32 residues long PlnK forms a central amphiphilic alpha-helix between Gly-9 and Leu-24. Measurements of the effect on anti-microbial activity of single glycine replacements in PlnJ and PlnK show that Gly-13 and Gly-17 in both peptides are very sensitive, giving more than a 100-fold reduction in activity when large residues replace glycine. In variants where other glycine residues, Gly-20 in PlnJ and Gly-7, Gly-9, Gly-24 and Gly-25 in PlnK, were replaced, the activity was reduced less than 10-fold. It is proposed that the detrimental effect on activity when exchanging Gly-13 and Gly-17 in PlnJ and PlnK is a result of reduced ability of the two peptides to interact through the GxxxG-motifs constituting Gly-13 and Gly-17.

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Organizational Affiliation: 

Department of Molecular Biosciences, University of Oslo, Blindern, Oslo, Norway. [e-mail]

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
PlnK	A	32	Lactiplantibacillus plantarum	Mutation(s): 0  Gene Names:  plnK, AMBR_LLDLPDMO_02171, AVR82_01620, AYO51_04005, C7M34_01627, C7M36_00841, CFI62_05320, DQQ11_01725, GB995_00570, IV39_GL002638, Lp19_1645, LPJSA22_00373, LpLQ80_01750
UniProt
Find proteins for P71460 (Lactiplantibacillus plantarum) Explore P71460  Go to UniProtKB:  P71460

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 
• OLDERADO: 2KEG Olderado

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2009-01-30 
• Released Date: 2009-07-07 
Deposition Author(s): Rogne, P., Haugen, M., Fimland, G., Nissen-Meyer, J., Kristiansen, P.

Revision History  

• Version 1.0: 2009-07-07
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2022-03-16
  Changes: Data collection, Database references, Derived calculations