2K4R

NMR solution structure of the neurotrypsin kringle domain

• PDB DOI: https://doi.org/10.2210/pdb2K4R/pdb

• Classification: HYDROLASE
• Organism(s): Rattus norvegicus
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2008-06-16 Released: 2008-12-09 
• Deposition Author(s): Ozhogina, O.A.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 70 
• Conformers Submitted: 29 
• Selection Criteria: STRUCTURES WITH THE LEAST RESTRAINT VIOLATIONS, STRUCTURES WITH THE LOWEST ENERGY 

Literature

NMR Solution Structure of the Neurotrypsin Kringle Domain

Ozhogina, O.A., Grishaev, A., Bominaar, E.L., Llinas, M.

(2008) Biochemistry 47: 12290-12298

• PubMed: 18956887 
• DOI: https://doi.org/10.1021/bi800555z
• Primary Citation of Related Structures:  
  2K4R, 2K51


• PubMed Abstract: 
  

  Neurotrypsin is a multidomain protein that serves as a brain-specific serine protease. Here we report the NMR structure of its kringle domain, NT/K. The data analysis was performed with the BACUS (Bayesian analysis of coupled unassigned spins) algorithm. This study presents the first application of BACUS to the structure determination of a 13C unenriched protein for which no prior experimental 3D structure was available. NT/K adopts the kringle fold, consisting of an antiparallel beta-sheet bridged by an overlapping pair of disulfides. The structure reveals the presence of a surface-exposed left-handed polyproline II helix that is closely packed to the core beta-structure. This feature distinguishes NT/K from other members of the kringle fold and points toward a novel functional role for a kringle domain. Functional divergence among kringle domains is discussed on the basis of their surface and electrostatic characteristics.

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Organizational Affiliation: 

Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, USA. [e-mail]

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 8.54 kDa 
• Atom Count: 601 
• Modelled Residue Count: 77 
• Deposited Residue Count: 77 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Neurotrypsin	A	77	Rattus norvegicus	Mutation(s): 0  Gene Names: Prss12, nt EC: 3.4.21
UniProt
Find proteins for G3V801 (Rattus norvegicus) Explore G3V801  Go to UniProtKB:  G3V801

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 70 
• Conformers Submitted: 29 
• Selection Criteria: STRUCTURES WITH THE LEAST RESTRAINT VIOLATIONS, STRUCTURES WITH THE LOWEST ENERGY 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2008-12-09 
Deposition Author(s): Ozhogina, O.A.

Revision History  

• Version 1.0: 2008-12-09
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2022-03-16
  Changes: Data collection, Database references, Derived calculations