Biological Assembly 1  

 3D View: Structure | 1D-3D View | Validation Report

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 16.90 kDa 
• Atom Count: 1188 
• Modelled Residue Count: 156 
• Deposited Residue Count: 156 
• Unique protein chains: 1

2K4Q

The Solution Structure of gpV, the Major Tail Protein from Bacteriophage Lambda

• PDB DOI: 10.2210/pdb2K4Q/pdb
• BMRB: 15807

• Classification: VIRAL PROTEIN
• Organism(s): Escherichia virus Lambda
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2008-06-16 Released: 2009-02-17 
• Deposition Author(s): Pell, L.G., Kanelis, V., Howell, P., Davidson, A.R.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 

Literature

The phage lambda major tail protein structure reveals a common evolution for long-tailed phages and the type VI bacterial secretion system.

Pell, L.G., Kanelis, V., Donaldson, L.W., Howell, P.L., Davidson, A.R.

(2009) Proc Natl Acad Sci U S A 106: 4160-4165

• PubMed: 19251647 
• DOI: 10.1073/pnas.0900044106
• Primary Citation of Related Structures:  
  2K4Q


• PubMed Abstract: 
  

Most bacteriophages possess long tails, which serve as the conduit for genome delivery. We report the solution structure of the N-terminal domain of gpV, the protein comprising the major portion of the noncontractile phage lambda tail tube. This structure is very similar to a previously solved tail tube protein from a contractile-tailed phage, providing the first direct evidence of an evolutionary connection between these 2 distinct types of phage tails. A remarkable structural similarity is also seen to Hcp1, a component of the bacterial type VI secretion system. The hexameric structure of Hcp1 and its ability to form long tubes are strikingly reminiscent of gpV when it is polymerized into a tail tube. These data coupled with other similarities between phage and type VI secretion proteins support an evolutionary relationship between these systems. Using Hcp1 as a model, we propose a polymerization mechanism for gpV involving several disorder-to-order transitions.

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Organizational Affiliation: 

Department of Biochemistry, University of Toronto, Medical Sciences Building, Toronto, ON M5S 1A8, Canada.

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Major tail protein V	A	156	Escherichia virus Lambda	Mutation(s): 0  Gene Names: V, lambdap13
UniProt
Find proteins for P03733 (Escherichia phage lambda) Explore P03733  Go to UniProtKB:  P03733

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 
• OLDERADO: 2K4Q Olderado

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2008-06-16 
• Released Date: 2009-02-17 
Deposition Author(s): Pell, L.G., Kanelis, V., Howell, P., Davidson, A.R.

Revision History  

• Version 1.0: 2009-02-17
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2020-02-19
  Changes: Database references, Derived calculations, Other