2K2G | pdb_00002k2g

Solution structure of the wild-type catalytic domain of human matrix metalloproteinase 12 (MMP-12) in complex with a tight-binding inhibitor

• PDB DOI: https://doi.org/10.2210/pdb2K2G/pdb

• Classification: HYDROLASE
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2008-04-01 Released: 2008-05-20 
• Deposition Author(s): Markus, M.A., Dwyer, B., Wolfrom, S., Li, J., Li, W., Malakian, K., Wilhelm, J., Tsao, D.H.H.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 17 
• Selection Criteria: structures with the least restraint violations 

Literature

Solution structure of wild-type human matrix metalloproteinase 12 (MMP-12) in complex with a tight-binding inhibitor.

Markus, M.A., Dwyer, B., Wolfrom, S., Li, J., Li, W., Malakian, K., Wilhelm, J., Tsao, D.H.

(2008) J Biomol NMR 41: 55-60

• PubMed: 18425585 
• DOI: https://doi.org/10.1007/s10858-008-9236-4
• Primary Citation Related Structures: 
  2K2G

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Organizational Affiliation: 
• Structural Biology and Computational Chemistry, Chemical and Screening Sciences, Wyeth Research, 87 Cambridge Park Drive, Cambridge, MA 02140, USA. [e-mail]

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 18.86 kDa 
• Atom Count: 1,325 
• Modeled Residue Count: 165 
• Deposited Residue Count: 165 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Macrophage metalloelastase	A	165	Homo sapiens	Mutation(s): 0  Gene Names: MMP12, HME EC: 3.4.24.65
UniProt & NIH Common Fund Data Resources
Find proteins for P39900 (Homo sapiens) Explore P39900  Go to UniProtKB:  P39900
PHAROS:  P39900 GTEx:  ENSG00000262406

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
DSV	D [auth A]	N-(dibenzo[b,d]thiophen-3-ylsulfonyl)-L-valine C17 H17 N O4 S2 RZWYSEXQXOXWKA-INIZCTEOSA-N
ZN	B [auth A], C [auth A]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 17 
• Selection Criteria: structures with the least restraint violations 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2008-05-20 
Deposition Author(s): Markus, M.A., Dwyer, B., Wolfrom, S., Li, J., Li, W., Malakian, K., Wilhelm, J., Tsao, D.H.H.

Revision History  

• Version 1.0: 2008-05-20
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2022-03-16
  Changes: Data collection, Database references, Derived calculations
• Version 1.3: 2024-05-29
  Changes: Data collection