2K1D | pdb_00002k1d

NMR Studies of a Pathogenic Mutant (D178N) of the Human Prion Protein

PDB DOI: https://doi.org/10.2210/pdb2K1D/pdb
BMRB: 15676

Classification: UNKNOWN FUNCTION
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2008-02-29 Released: 2009-03-03
Deposition Author(s): Mills, J.L., Surewicz, K., Surewicz, W.K., Sonnichsen, F.D.

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the least restraint violations

wwPDB Validation 3D Report Full Report

Validation slider image for 2K1D

This is version 1.6 of the entry. See complete history.

Literature

Residue 129 polymorphism and conformational dynamics of familial prion diseases associated with the human prion protein variant D178N

Mills, J.L., Surewicz, K., Surewicz, W.K., Sonnichsen, F.D.

To be published.

Macromolecule Content

Total Structure Weight: 16.49 kDa
Atom Count: 892
Modeled Residue Count: 107
Deposited Residue Count: 146
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Major prion protein	A	146	Homo sapiens	Mutation(s): 2 Gene Names: PRNP, PRIP, PRP
UniProt & NIH Common Fund Data Resources
Find proteins for P04156 (Homo sapiens) Explore P04156 Go to UniProtKB: P04156
PHAROS: P04156 GTEx: ENSG00000171867
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P04156
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the least restraint violations

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2009-03-03

Deposition Author(s):

Sonnichsen, F.D.

Revision History (Full details and data files)

Version 1.0: 2009-03-03
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2015-07-22
Changes: Database references
Version 1.3: 2020-02-19
Changes: Database references, Other
Version 1.4: 2021-10-20
Changes: Database references
Version 1.5: 2023-06-14
Changes: Other
Version 1.6: 2024-05-08
Changes: Data collection, Database references

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.