2K16 | pdb_00002k16

Solution structure of the free TAF3 PHD domain

PDB DOI: https://doi.org/10.2210/pdb2K16/pdb
BMRB: 15670

Classification: TRANSCRIPTION
Organism(s): Mus musculus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2008-02-22 Released: 2008-07-15
Deposition Author(s): van Ingen, H., van Schaik, F.M.A., Wienk, H., Timmers, M., Boelens, R.

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

wwPDB Validation 3D Report Full Report

Validation slider image for 2K16

This is version 1.4 of the entry. See complete history.

Literature

Recognition of the H3K4me3 mark by the TAF3-PHD finger

van Ingen, H., van Schaik, F.M.A., Wienk, H., Ballering, J., Deschesne, A., Kruijzer, J., Timmers, H., Boelens, R.

To be published.

Macromolecule Content

Total Structure Weight: 8.74 kDa
Atom Count: 599
Modeled Residue Count: 75
Deposited Residue Count: 75
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Transcription initiation factor TFIID subunit 3	A	75	Mus musculus	Mutation(s): 0 Gene Names: Taf3
UniProt
Find proteins for Q5HZG4 (Mus musculus) Explore Q5HZG4 Go to UniProtKB: Q5HZG4
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q5HZG4
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ZN Query on ZN Download:Ideal Coordinates CCD File SDF format, chain B [auth A] SDF format, chain C [auth A] MOL2 format, chain B [auth A] MOL2 format, chain C [auth A] mmCIF format, chain B [auth A] mmCIF format, chain C [auth A]	B [auth A], C [auth A]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain B [auth A] Focus chain C [auth A]

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2008-07-15

Deposition Author(s):

van Schaik, F.M.A.

Revision History (Full details and data files)

Version 1.0: 2008-07-15
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2020-02-19
Changes: Data collection, Database references, Derived calculations, Other
Version 1.3: 2023-06-14
Changes: Database references, Derived calculations, Other
Version 1.4: 2024-05-08
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.