2JZC | pdb_00002jzc

NMR solution structure of ALG13: The sugar donor subunit of a yeast N-acetylglucosamine transferase. Northeast Structural Genomics Consortium target YG1


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 50 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the least restraint violations 

wwPDB Validation 3D Report Full Report

Validation slider image for 2JZC

This is version 1.4 of the entry. See complete history

Literature

Solution structure of Alg13: the sugar donor subunit of a yeast N-acetylglucosamine transferase.

Wang, X.Weldeghiorghis, T.Zhang, G.Imperiali, B.Prestegard, J.H.

(2008) Structure 16: 965-975

  • DOI: https://doi.org/10.1016/j.str.2008.03.010
  • Primary Citation Related Structures: 
    2JZC

  • PubMed Abstract: 

    The solution structure of Alg13, the glycosyl donor-binding domain of an important bipartite glycosyltransferase in the yeast Saccharomyces cerevisiae, is presented. This glycosyltransferase is unusual in that it is active only in the presence of a binding partner, Alg14. Alg13 is found to adopt a unique topology among glycosyltransferases. Rather than the conventional Rossmann fold found in all GT-B enzymes, the N-terminal half of the protein is a Rossmann-like fold with a mixed parallel and antiparallel beta sheet. The Rossmann fold of the C-terminal half of Alg13 is conserved. However, although conventional GT-B enzymes usually possess three helices at the C terminus, only two helices are present in Alg13. Titration of Alg13 with both UDP-GlcNAc, the native glycosyl donor, and a paramagnetic mimic, UDP-TEMPO, shows that the interaction of Alg13 with the sugar donor is primarily through the residues in the C-terminal half of the protein.


  • Organizational Affiliation
    • Complex Carbohydrate Research Center, University of Georgia, Athens, GA 30602, USA.

Macromolecule Content 

  • Total Structure Weight: 25.1 kDa 
  • Atom Count: 1,584 
  • Modeled Residue Count: 201 
  • Deposited Residue Count: 224 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
UDP-N-acetylglucosamine transferase subunit ALG13224Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: ALG13YGL047W
EC: 2.4.1.141
UniProt
Find proteins for P53178 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P53178 
Go to UniProtKB:  P53178
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP53178
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 50 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the least restraint violations 

Structure Validation

View Full Validation Report



Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2008-02-19
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2020-02-19
    Changes: Data collection, Database references, Derived calculations, Other
  • Version 1.3: 2023-06-14
    Changes: Database references, Other
  • Version 1.4: 2024-05-08
    Changes: Data collection, Database references