2JXC

Structure of the EPS15-EH2 Stonin2 Complex

Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the lowest energy 

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This is version 1.2 of the entry. See complete history. 


Literature

Structure of the Eps15-stonin2 complex provides a molecular explanation for EH-domain ligand specificity.

Rumpf, J., Simon, B., Jung, N., Maritzen, T., Haucke, V., Sattler, M., Groemping, Y.

(2008) EMBO J 27: 558-569

  • DOI: 10.1038/sj.emboj.7601980
  • Primary Citation of Related Structures:  
    2JXC

  • PubMed Abstract: 

    • Eps15 homology (EH) domain-containing proteins play a key regulatory role in intracellular membrane trafficking and cell signalling. EH domains serve as interaction platforms for short peptide motifs comprising the residues NPF within natively unstructured regions of accessory proteins ...

    Eps15 homology (EH) domain-containing proteins play a key regulatory role in intracellular membrane trafficking and cell signalling. EH domains serve as interaction platforms for short peptide motifs comprising the residues NPF within natively unstructured regions of accessory proteins. The EH-NPF interactions described thus far are of very low affinity and specificity. Here, we identify the presynaptic endocytic sorting adaptor stonin2 as a high-affinity ligand for the second EH domain (EH2) of the clathrin accessory protein Eps15. Calorimetric data indicate that both NPF motifs within stonin2 interact with EH2 simultaneously and with sub-micromolar affinity. The solution structure of this complex reveals that the first NPF motif binds to the conserved site on the EH domain, whereas the second motif inserts into a novel hydrophobic pocket. Our data show how combination of two EH-attachment sites provides a means for modulating specificity and allows discrimination from a large pool of potential binding partners containing NPF motifs.

    Related Citations: 
    • 1H, 13C, and 15N Chemical Shift Assignments for the Eps15-Stonin2 complex
      Rumpf, J., Simon, B., Groemping, Y., Sattler, M.
      () To be published --: --
    Organizational Affiliation: 

    Department of Biomolecular Mechanisms, Max-Planck-Institute for Medical Research, Heidelberg, Germany.



Macromolecules
Find similar proteins by: 
(by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Epidermal growth factor receptor substrate 15A100Homo sapiensMutation(s): 0 
Gene Names: EPS15, AF1P
Find proteins for P42566 (Homo sapiens)
Explore P42566 
Go to UniProtKB:  P42566
NIH Common Fund Data Resources
PHAROS:  P42566
GTEx:  ENSG00000085832
Protein Feature View
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  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Stonin-2B45Homo sapiensMutation(s): 0 
Gene Names: STON2, STN2, STNB
Find proteins for Q8WXE9 (Homo sapiens)
Explore Q8WXE9 
Go to UniProtKB:  Q8WXE9
NIH Common Fund Data Resources
PHAROS:  Q8WXE9
GTEx:  ENSG00000140022
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CA
Query on CA
Download Ideal Coordinates CCD File 
 C [auth A]CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N		 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the lowest energy 
  • OLDERADO: 2JXC Olderado

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2008-01-08
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2013-06-19
    Changes: Database references