2JX4 | pdb_00002jx4

NMR structure of the intracellular loop (i3) of the vasopressin V2 receptor (GPCR)

PDB DOI: https://doi.org/10.2210/pdb2JX4/pdb

Classification: MEMBRANE PROTEIN
Organism(s): Rattus norvegicus
Mutation(s): Yes
Membrane Protein: Yes OPM

Deposited: 2007-11-06 Released: 2008-11-18
Deposition Author(s): Bellot, G., Demene, H.

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 800
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

wwPDB Validation 3D Report Full Report

Validation slider image for 2JX4

This is version 1.2 of the entry. See complete history.

Literature

Structure of the third intracellular loop of the vasopressin V2 receptor and conformational changes upon binding to gC1qR

Bellot, G., Granier, S., Bourguet, W., Seyer, R., Rahmeh, R., Mouillac, B., Pascal, R., Mendre, C., Demene, H.

To be published.

Macromolecule Content

Total Structure Weight: 5.53 kDa
Atom Count: 387
Modeled Residue Count: 52
Deposited Residue Count: 52
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Vasopressin V2 receptor	A	52	N/A	Mutation(s): 2 Membrane Entity: Yes
UniProt
Find proteins for Q00788 (Rattus norvegicus) Explore Q00788 Go to UniProtKB: Q00788
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q00788
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 2 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
CCS Query on CCS	A	L-PEPTIDE LINKING	C₅ H₉ N O₄ S		CYS
DGN Query on DGN	A	D-PEPTIDE LINKING	C₅ H₁₀ N₂ O₃		--
NLE Query on NLE	A	L-PEPTIDE LINKING	C₆ H₁₃ N O₂		LEU

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 800
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

Structure Validation

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Entry History

Deposition Data

Released Date: 2008-11-18

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2008-11-18
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2021-11-10
Changes: Data collection, Database references, Derived calculations

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.