Biological Assembly 1  

 3D View: Structure | 1D-3D View | Validation Report

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 3.55 kDa 
• Atom Count: 250 
• Modelled Residue Count: 33 
• Deposited Residue Count: 33 
• Unique protein chains: 1

2JUI

Three-Dimensional Structure of the two Peptides that Constitute the Two-Peptide Bacteriocin Plantaracin EF

• PDB DOI: 10.2210/pdb2JUI/pdb

• Classification: TOXIN
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2007-08-27 Released: 2008-07-01 
• Deposition Author(s): Fimland, N., Rogne, P., Fimland, G., Nissen-Meyer, J., Kristiansen, P.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 

Literature

Three-dimensional structure of the two peptides that constitute the two-peptide bacteriocin plantaricin EF

Fimland, N., Rogne, P., Fimland, G., Nissen-Meyer, J., Kristiansen, P.E.

(2008) Biochim Biophys Acta 1784: 1711-1719

• PubMed: 18555030 
• DOI: 10.1016/j.bbapap.2008.05.003
• Primary Citation of Related Structures:  
  2JUI, 2RLW


• PubMed Abstract: 
  

The three-dimensional structures of the two peptides plantaricin E (plnE; 33 residues) and plantaricin F (plnF; 34 residues) constituting the two-peptide bacteriocin plantaricin EF (plnEF) have been determined by nuclear magnetic resonance (NMR) spectroscopy in the presence of DPC micelles. PlnE has an N-terminal alpha-helix (residues 10-21), and a C-terminal alpha-helix-like structure (residues 25-31). PlnF has a long central alpha-helix (residues 7-32) with a kink of 38+/-7 degrees at Pro20. There is some flexibility in the helix in the kink region. Both helices in plnE are amphiphilic, while the helix in plnF is polar in its N-terminal half and amphiphilic in its C-terminal half. The alpha-helical content obtained by NMR spectroscopy is in agreement with CD studies. PlnE has two GxxxG motifs which are putative helix-helix interaction motifs, one at residues 5 to 9 and one at residues 20 to 24, while plnF has one such motif at residues 30 to 34. The peptides are flexible in these GxxxG regions. It is suggested that the two peptides lie parallel in a staggered fashion relative to each other and interact through helix-helix interactions involving the GxxxG motifs.

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Organizational Affiliation: 

Department of Molecular Biosciences, University of Oslo, Pb. 1041 Blindern, 0316 Oslo, Norway.

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
PlnE	A	33	N/A	Mutation(s): 0  Gene Names: plnE
UniProt
Find proteins for P71470 (Lactiplantibacillus plantarum) Explore P71470  Go to UniProtKB:  P71470

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 
• OLDERADO: 2JUI Olderado

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2007-08-27 
• Released Date: 2008-07-01 
Deposition Author(s): Fimland, N., Rogne, P., Fimland, G., Nissen-Meyer, J., Kristiansen, P.

Revision History  

• Version 1.0: 2008-07-01
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2022-03-16
  Changes: Data collection, Database references, Derived calculations