2JNE | pdb_00002jne

NMR structure of E.coli YfgJ modelled with two Zn+2 bound. Northeast Structural Genomics Consortium Target ER317.

PDB DOI: https://doi.org/10.2210/pdb2JNE/pdb

Classification: METAL BINDING PROTEIN
Organism(s): Escherichia coli
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2007-01-12 Released: 2007-02-13
Deposition Author(s): Ramelot, T.A., Cort, J.R., Yee, A.A., Semesi, A., Lukin, J.A., Arrowsmith, C.H., Kennedy, M.A., Northeast Structural Genomics Consortium (NESG)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: closest to the average

wwPDB Validation 3D Report Full Report

Validation slider image for 2JNE

This is version 1.4 of the entry. See complete history.

Literature

NMR structure of E.coli YfgJ bound to two Zn+2.

Ramelot, T.A., Cort, J.R., Yee, A.A., Arrowsmith, C.H., Kennedy, M.A.

To be published.

Macromolecule Content

Total Structure Weight: 11.62 kDa
Atom Count: 556
Modeled Residue Count: 71
Deposited Residue Count: 101
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hypothetical protein yfgJ	A	101	Escherichia coli	Mutation(s): 0 Gene Names: yfgJ
UniProt
Find proteins for P76575 (Escherichia coli (strain K12)) Explore P76575 Go to UniProtKB: P76575
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P76575
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ZN Query on ZN Download:Ideal Coordinates CCD File SDF format, chain B [auth A] SDF format, chain C [auth A] MOL2 format, chain B [auth A] MOL2 format, chain C [auth A] mmCIF format, chain B [auth A] mmCIF format, chain C [auth A]	B [auth A], C [auth A]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain B [auth A] Focus chain C [auth A]

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: closest to the average

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2007-02-13

Deposition Author(s):

Arrowsmith, C.H.

Northeast Structural Genomics Consortium (NESG)

Revision History (Full details and data files)

Version 1.0: 2007-02-13
Type: Initial release
Version 1.1: 2008-05-01
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2018-01-31
Changes: Derived calculations, Structure summary
Version 1.4: 2023-12-20
Changes: Data collection, Database references, Derived calculations, Other

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.