Biological Assembly 1  

 3D View: Structure | 1D-3D View | Validation Report | Predict Membrane 

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 17.20 kDa 
• Atom Count: 1213 
• Modelled Residue Count: 156 
• Deposited Residue Count: 156 
• Unique protein chains: 1

2JMM

NMR solution structure of a minimal transmembrane beta-barrel platform protein

• PDB DOI: 10.2210/pdb2JMM/pdb
• BMRB: 15045

• Classification: MEMBRANE PROTEIN
• Organism(s): Escherichia coli
• Expression System: Escherichia coli
• Mutation(s): No 
• Membrane Protein: Yes  OPMPDBTMMemProtMDmpstruc


• Deposited: 2006-11-20 Released: 2007-07-03 
• Deposition Author(s): Johansson, M.U., Alioth, S., Hu, K., Walser, R., Koebnik, R., Pervushin, K.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 160 
• Conformers Submitted: 10 
• Selection Criteria: structures with the lowest energy 

Literature

A minimal transmembrane beta-barrel platform protein studied by nuclear magnetic resonance

Johansson, M.U., Alioth, S., Hu, K., Walser, R., Koebnik, R., Pervushin, K.

(2007) Biochemistry 46: 1128-1140

• PubMed: 17260943 
• DOI: 10.1021/bi061265e
• Primary Citation of Related Structures:  
  2JMM


• PubMed Abstract: 
  

In this study, we were concerned with the structural role of the surface-exposed extracellular loops of the N-terminal transmembrane (TM) domain of OmpA. A variant of the TM domain of outer membrane protein A (OmpA) with all four such loops shortened, which we call the beta-barrel platform (BBP), was successfully refolded. This indicates that the removed parts of the surface-exposed loops indeed do not contain amino acid sequences critical for this membrane protein's refolding in vitro. BBP has the potential to be used as a template beta-barrel membrane protein structure for the development of novel functions, although our results also highlight the potential difficulties that can arise when functionality is being engineered into the loop regions of membrane proteins. We have used solution nuclear magnetic resonance spectroscopy to determine the global fold of BBP+EF, BBP with a metal ion-binding EF-hand inserted in one of the shortened loops. BBP and BBP+EF in dihexanoylphosphatidylcholine micelles are eight-stranded antiparallel beta-barrels, and BBP represents the smallest beta-structured integral membrane protein known to date.

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Organizational Affiliation: 

Laboratorium für Physikalische Chemie, ETH Hönggerberg, Wolfgang-Pauli-Strasse 10, CH-8093 Zürich, Switzerland. [e-mail]

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Outer membrane protein A	A	156	Escherichia coli	Mutation(s): 0  Gene Names: ompA, con, tolG, tut Membrane Entity: Yes
UniProt
Find proteins for P0A910 (Escherichia coli (strain K12)) Explore P0A910  Go to UniProtKB:  P0A910

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 160 
• Conformers Submitted: 10 
• Selection Criteria: structures with the lowest energy 
• OLDERADO: 2JMM Olderado

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2006-11-20 
• Released Date: 2007-07-03 
Deposition Author(s): Johansson, M.U., Alioth, S., Hu, K., Walser, R., Koebnik, R., Pervushin, K.

Revision History  

• Version 1.0: 2007-07-03
  Type: Initial release
  
• Version 1.1: 2008-05-01
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2020-02-05
  Changes: Data collection, Database references, Derived calculations, Experimental preparation, Other