Macromolecule Content

• Total Structure Weight: 14.06 kDa 
• Atom Count: 1954 
• Residue Count: 117 
• Unique protein chains: 1

2JMH

NMR solution structure of Blo t 5, a major mite allergen from Blomia tropicalis

• DOI: 10.2210/pdb2JMH/pdb

• Classification: ALLERGEN
• Organism(s): Blomia tropicalis
• Expression System: Escherichia coli BL21
• Mutation(s): No 


• Deposited: 2006-11-12 Released: 2007-11-13 
• Deposition Author(s): Naik, M.T., Chang, C., Kuo, I., Chua, K., Huang, T.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 21 
• Selection Criteria: structures with the lowest energy 

Literature

Roles of Structure and Structural Dynamics in the Antibody Recognition of the Allergen Proteins: An NMR Study on Blomia tropicalis Major Allergen

Naik, M.T., Chang, C.F., Kuo, I.C., Kung, C.C., Yi, F.C., Chua, K.Y., Huang, T.H.

(2008) Structure 16: 125-136

• PubMed: 18184590 
• DOI: 10.1016/j.str.2007.10.022
• Structures With Same Primary Citation


• PubMed Abstract: 
  

Blo t 5 is the major allergen from Blomia tropicalis mites and shows strong IgE reactivity with up to 90% of asthmatic and rhinitis patients' sera. The NMR solution structure of Blo t 5 comprises three long alpha helices, forming a coiled-coil, triple-helical bundle with a left-handed twist. TROSY-NMR experiments were used to study Blo t 5 interaction with the Fab' of a specific monoclonal antibody, mAb 4A7. The mAb epitope comprises two closely spaced surfaces, I and II, connected by a sharp turn and bearing critical residues Asn46 and Lys47 on one surface, and Lys54 and Arg57 on the other. This discontinuous epitope overlaps with the human IgE epitope(s) of Blo t 5. Epitope surface II is further predicted to undergo conformational exchange in the millisecond to microsecond range. The results presented are critical for the design of a hypoallergenic Blo t 5 for efficacious immunotherapy of allergic diseases.

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Organizational Affiliation: 

Institute of Biomedical Sciences, Academia Sinica, Taipei 11529, Taiwan.

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
Mite allergen Blo t 5	A	119	Blomia tropicalis	Mutation(s): 0  Gene Names: BLOT5
Find proteins for O96870 (Blomia tropicalis) Go to UniProtKB:  O96870

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 21 
• Selection Criteria: structures with the lowest energy 
• OLDERADO: 2JMH Olderado

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2006-11-12 
• Released Date: 2007-11-13 
Deposition Author(s): Naik, M.T., Chang, C., Kuo, I., Chua, K., Huang, T.

Revision History 

• Version 1.0: 2007-11-13
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance