2JK4

Structure of the human voltage-dependent anion channel


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.10 Å
  • R-Value Free: 0.387 
  • R-Value Work: 0.325 
  • R-Value Observed: 0.331 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structure of the Human Voltage-Dependent Anion Channel.

Bayrhuber, M.Meins, T.Habeck, M.Becker, S.Giller, K.Villinger, S.Vonrhein, C.Griesinger, C.Zweckstetter, M.Zeth, K.

(2008) Proc Natl Acad Sci U S A 105: 15370

  • DOI: 10.1073/pnas.0808115105
  • Primary Citation of Related Structures:  
    2JK4

  • PubMed Abstract: 
  • The voltage-dependent anion channel (VDAC), also known as mitochondrial porin, is the most abundant protein in the mitochondrial outer membrane (MOM). VDAC is the channel known to guide the metabolic flux across the MOM and plays a key role in mitochondrially induced apoptosis ...

    The voltage-dependent anion channel (VDAC), also known as mitochondrial porin, is the most abundant protein in the mitochondrial outer membrane (MOM). VDAC is the channel known to guide the metabolic flux across the MOM and plays a key role in mitochondrially induced apoptosis. Here, we present the 3D structure of human VDAC1, which was solved conjointly by NMR spectroscopy and x-ray crystallography. Human VDAC1 (hVDAC1) adopts a beta-barrel architecture composed of 19 beta-strands with an alpha-helix located horizontally midway within the pore. Bioinformatic analysis indicates that this channel architecture is common to all VDAC proteins and is adopted by the general import pore TOM40 of mammals, which is also located in the MOM.


    Organizational Affiliation

    Department of NMR-Based Structural Biology, Max Planck Institute for Biophysical Chemistry, Am Fassberg 11, 37077 Göttingen, Germany.



Macromolecules
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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL PROTEIN 1A294Homo sapiensMutation(s): 0 
Gene Names: VDAC1VDAC
Membrane protein
Mpstruc
Group: 
TRANSMEMBRANE PROTEINS: BETA-BARREL
Sub Group: 
Mitochondrial Outer Membrane Beta Barrel Proteins
Protein: 
VDAC-1 voltage dependent anion channel
Find proteins for P21796 (Homo sapiens)
Explore P21796 
Go to UniProtKB:  P21796
NIH Common Fund Data Resources
PHAROS:  P21796
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.10 Å
  • R-Value Free: 0.387 
  • R-Value Work: 0.325 
  • R-Value Observed: 0.331 
  • Space Group: P 32 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 77.99α = 90
b = 77.99β = 90
c = 167.04γ = 120
Software Package:
Software NamePurpose
BUSTER-TNTrefinement
XDSdata reduction
SCALAdata scaling
SHELXDphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2008-10-14
    Type: Initial release
  • Version 1.1: 2011-05-07
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance