2JHP

The structure of bluetongue virus VP4 reveals a multifunctional RNA- capping production-line


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.289 
  • R-Value Work: 0.226 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Bluetongue Virus Vp4 is an RNA-Capping Assembly Line.

Sutton, G.Grimes, J.M.Stuart, D.I.Roy, P.

(2007) Nat.Struct.Mol.Biol. 14: 449

  • DOI: 10.1038/nsmb1225
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • Eukaryotic organisms cap the 5' ends of their messenger RNAs by a series of four chemical reactions. Some viruses achieve this using a single molecule; the crystal structure of such an enzyme from bluetongue virus reveals an elongated modular archite ...

    Eukaryotic organisms cap the 5' ends of their messenger RNAs by a series of four chemical reactions. Some viruses achieve this using a single molecule; the crystal structure of such an enzyme from bluetongue virus reveals an elongated modular architecture that provides a scaffold for an assemblage of active sites, two contributed by a domain of novel structure.


    Organizational Affiliation

    Division of Structural Biology, The Wellcome Trust Centre for Human Genetics, University of Oxford, Roosevelt Drive, Headington, Oxford, OX3 7BN, UK.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
VP4 CORE PROTEIN
A
644Bluetongue virus 10 (isolate USA)Mutation(s): 0 
Gene Names: Segment-4
Find proteins for P07132 (Bluetongue virus 10 (isolate USA))
Go to UniProtKB:  P07132
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SAH
Query on SAH

Download SDF File 
Download CCD File 
A
S-ADENOSYL-L-HOMOCYSTEINE
C14 H20 N6 O5 S
ZJUKTBDSGOFHSH-WFMPWKQPSA-N
 Ligand Interaction
GUN
Query on GUN

Download SDF File 
Download CCD File 
A
GUANINE
C5 H5 N5 O
UYTPUPDQBNUYGX-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.289 
  • R-Value Work: 0.226 
  • Space Group: P 65 2 2
Unit Cell:
Length (Å)Angle (°)
a = 76.242α = 90.00
b = 76.242β = 90.00
c = 421.508γ = 120.00
Software Package:
Software NamePurpose
SHELXCDphasing
piratemodel building
SCALEPACKdata scaling
SHELXDphasing
SHARPphasing
REFMACrefinement
piratephasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2007-04-10
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Refinement description, Version format compliance
  • Version 1.2: 2017-06-21
    Type: Refinement description, Source and taxonomy
  • Version 1.3: 2019-05-08
    Type: Data collection, Experimental preparation