2JG3

MtaqI with BAZ


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 0.226 
  • R-Value Work: 0.185 
  • R-Value Observed: 0.187 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Quantitative Labeling of Long Plasmid DNA with Nanometer Precision.

Pljevaljcic, G.Schmidt, F.Scheidig, A.J.Lurz, R.Weinhold, E.

(2007) Chembiochem 8: 1516


Macromolecules

Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
MODIFICATION METHYLASE TAQIAD421Thermus aquaticusMutation(s): 0 
Gene Names: taqIM
EC: 2.1.1.72
Find proteins for P14385 (Thermus aquaticus)
Explore P14385 
Go to UniProtKB:  P14385
Protein Feature View
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  • Reference Sequence
  • Find similar nucleic acids by:  Sequence   |   Structure
  • Entity ID: 2
    MoleculeChainsLengthOrganismImage
    5'-D(*GP*TP*TP*CP*GP*AP*TP*GP*TP*CP)-3'B, E10synthetic construct
    • Find similar nucleic acids by:  Sequence   |   Structure
    • Entity ID: 3
      MoleculeChainsLengthOrganismImage
      5'-D(*GP*AP*CP*AP*TP*CP*GP*6MAP*AP*CP)-3'C, F10synthetic construct
      Small Molecules
      Ligands 3 Unique
      IDChainsName / Formula / InChI Key2D Diagram3D Interactions
      BA2
      Query on BA2

      Download CCD File 
      A, D
      5'-DEOXY-5'-(ETHYLAMINO)-8-{[4-({5-[(3AS,4S,6AR)-2-OXOHEXAHYDRO-1H-THIENO[3,4-D]IMIDAZOL-4-YL]PENTANOYL}AMINO)BUTYL]AMINO}ADENOSINE
      C26 H42 N10 O5 S
      GZOCMSGHLSHCGU-DGWADGOTSA-N
       Ligand Interaction
      GOL
      Query on GOL

      Download CCD File 
      A, B
      GLYCEROL
      C3 H8 O3
      PEDCQBHIVMGVHV-UHFFFAOYSA-N
       Ligand Interaction
      K
      Query on K

      Download CCD File 
      B, D
      POTASSIUM ION
      K
      NPYPAHLBTDXSSS-UHFFFAOYSA-N
       Ligand Interaction
      Experimental Data & Validation

      Experimental Data

      • Method: X-RAY DIFFRACTION
      • Resolution: 1.90 Å
      • R-Value Free: 0.226 
      • R-Value Work: 0.185 
      • R-Value Observed: 0.187 
      • Space Group: P 1 21 1
      Unit Cell:
      Length ( Å )Angle ( ˚ )
      a = 59.404α = 90
      b = 69.193β = 92.16
      c = 114.39γ = 90
      Software Package:
      Software NamePurpose
      REFMACrefinement
      MARdata reduction
      XDSdata scaling
      MOLREPphasing

      Structure Validation

      View Full Validation Report



      Entry History 

      Deposition Data

      Revision History 

      • Version 1.0: 2007-08-07
        Type: Initial release
      • Version 1.1: 2011-07-13
        Changes: Refinement description, Version format compliance
      • Version 1.2: 2019-01-30
        Changes: Data collection, Experimental preparation, Source and taxonomy
      • Version 1.3: 2019-02-06
        Changes: Data collection, Experimental preparation