2J1K

CAV-2 fibre head in complex with CAR D1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.220 
  • R-Value Work: 0.172 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structural and Mutational Analysis of Human Ad37 and Canine Adenovirus 2 Fiber Heads in Complex with the D1 Domain of Coxsackie and Adenovirus Receptor.

Seiradake, E.Lortat-Jacob, H.Billet, O.Kremer, E.J.Cusack, S.

(2006) J.Biol.Chem. 281: 33704

  • DOI: 10.1074/jbc.M605316200
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • Adenovirus fibers from most serotypes bind the D1 domain of coxsackie and adenovirus receptor (CAR), although the binding residues are not strictly conserved. To understand this further, we determined the crystal structures of canine adenovirus serot ...

    Adenovirus fibers from most serotypes bind the D1 domain of coxsackie and adenovirus receptor (CAR), although the binding residues are not strictly conserved. To understand this further, we determined the crystal structures of canine adenovirus serotype 2 (CAV-2) and the human adenovirus serotype 37 (HAd37) in complex with human CAR D1 at 2.3 and 1.5A resolution, respectively. Structure comparison with the HAd12 fiber head-CAR D1 complex showed that the overall topology of the interaction is conserved but that the interfaces differ in number and identity of interacting residues, shape complementarity, and degree of conformational adaptation. Using surface plasmon resonance, we characterized the binding affinity to CAR D1 of wild type and mutant CAV-2 and HAd37 fiber heads. We found that CAV-2 has the highest affinity but fewest direct interactions, with the reverse being true for HAd37. Moreover, we found that conserved interactions can have a minor contribution, whereas serotype-specific interactions can be essential. These results are discussed in the light of virus evolution and design of adenovirus vectors for gene transfer.


    Organizational Affiliation

    Grenoble Outstation, European Molecular Biology Laboratory, Grenoble, France.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
COXSACKIEVIRUS AND ADENOVIRUS RECEPTOR
A, B, G, J, K, O, P, T, V, X, Y, Z
128Homo sapiensMutation(s): 0 
Gene Names: CXADR (CAR)
Find proteins for P78310 (Homo sapiens)
Go to Gene View: CXADR
Go to UniProtKB:  P78310
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
FIBER PROTEIN
C, D, E, F, H, I, L, M, N, Q, R, S
197Canine adenovirus serotype 2 (strain Toronto A 26-61)Mutation(s): 0 
Find proteins for Q65914 (Canine adenovirus serotype 2 (strain Toronto A 26-61))
Go to UniProtKB:  Q65914
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.220 
  • R-Value Work: 0.172 
  • Space Group: I 4 2 2
Unit Cell:
Length (Å)Angle (°)
a = 219.940α = 90.00
b = 219.940β = 90.00
c = 387.530γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
XDSdata reduction
REFMACrefinement
XSCALEdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2006-09-05
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Advisory, Refinement description, Version format compliance