2IWM | pdb_00002iwm

precursor mutant Cys1Ser of Penicillin V Acylase from Bacillus sphaericus

PDB DOI: https://doi.org/10.2210/pdb2IWM/pdb

Classification: HYDROLASE
Organism(s): Lysinibacillus sphaericus
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2006-07-01 Released: 2007-08-07
Deposition Author(s): Chandra, P.M., Dodson, G., Suresh, C.G.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free:
0.247 (Depositor)
R-Value Work:
0.201 (Depositor)
R-Value Observed:
0.203 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Precursor Mutant Cys1Ser of Penicillin V Acylase from Bacilus Sphaericus

Chandra, P.M., Brannigan, J., Prabhune, A., Pundle, A., Turkenburg, J., Dodson, G., Suresh, C.G.

To be published.

Macromolecule Content

Total Structure Weight: 150.12 kDa
Atom Count: 10,733
Modeled Residue Count: 1,334
Deposited Residue Count: 1,352
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
PENICILLIN ACYLASE	A, B, C, D	338	Lysinibacillus sphaericus	Mutation(s): 1 EC: 3.5.1.11
UniProt
Find proteins for P12256 (Lysinibacillus sphaericus) Explore P12256 Go to UniProtKB: P12256
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P12256
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free: 0.247 (Depositor)
R-Value Work: 0.201 (Depositor)
R-Value Observed: 0.203 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 102.642	α = 90
b = 90.089	β = 102.13
c = 102.269	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
DENZO	data reduction
SCALEPACK	data scaling
AMoRE	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2007-08-07

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2007-08-07
Type: Initial release
Version 1.1: 2011-05-08
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2023-12-13
Changes: Data collection, Database references, Refinement description

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.