2IWI

CRYSTAL STRUCTURE OF THE HUMAN PIM2 IN COMPLEX WITH A RUTHENIUM ORGANOMETALLIC LIGAND RU1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.289 
  • R-Value Work: 0.242 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Crystal Structure of the Pim2 Kinase in Complex with an Organoruthenium Inhibitor.

Bullock, A.N.Russo, S.Amos, A.Pagano, N.Bregman, H.Debreczeni, J.E.Lee, W.H.von Delft, F.Meggers, E.Knapp, S.

(2009) Plos One 4: E7112

  • DOI: 10.1371/journal.pone.0007112

  • PubMed Abstract: 
  • The serine/threonine kinase PIM2 is highly expressed in human leukemia and lymphomas and has been shown to positively regulate survival and proliferation of tumor cells. Its diverse ATP site makes PIM2 a promising target for the development of antica ...

    The serine/threonine kinase PIM2 is highly expressed in human leukemia and lymphomas and has been shown to positively regulate survival and proliferation of tumor cells. Its diverse ATP site makes PIM2 a promising target for the development of anticancer agents. To date our knowledge of catalytic domain structures of the PIM kinase family is limited to PIM1 which has been extensively studied and which shares about 50% sequence identity with PIM2.


    Organizational Affiliation

    University of Oxford, Structural Genomics Consortium, Oxford, United Kingdom.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
SERINE/THREONINE-PROTEIN KINASE PIM-2
A, B
312Homo sapiensGene Names: PIM2
EC: 2.7.11.1
Find proteins for Q9P1W9 (Homo sapiens)
Go to Gene View: PIM2
Go to UniProtKB:  Q9P1W9
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
HB1
Query on HB1

Download SDF File 
Download CCD File 
A, B
RUTHENIUM-PYRIDOCARBAZOLE-1
C23 H13 N3 O3 Ru
HQDDSWVENMEGOZ-YLWOWRACCN
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.289 
  • R-Value Work: 0.242 
  • Space Group: H 3
Unit Cell:
Length (Å)Angle (°)
a = 153.070α = 90.00
b = 153.070β = 90.00
c = 78.600γ = 120.00
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Revision History 

  • Version 1.0: 2006-08-02
    Type: Initial release
  • Version 1.1: 2011-05-08
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance
  • Version 1.3: 2018-01-24
    Type: Database references, Structure summary