2IBL

Crystal structure of a helper molecule (HT-mf-thromb) based on mini-fibritin (mf) crystal structure (pdb:1OX3).


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.32 Å
  • R-Value Free: 0.170 
  • R-Value Work: 0.160 

wwPDB Validation 3D Report Full Report


This is version 1.4 of the entry. See complete history

Literature

The Coiled-coil Domain Structure of the Sin Nombre Virus Nucleocapsid Protein.

Boudko, S.P.Kuhn, R.J.Rossmann, M.G.

(2007) J.Mol.Biol. 366: 1538-1544

  • DOI: 10.1016/j.jmb.2006.12.046
  • Primary Citation of Related Structures:  2IC6, 2IC9

  • PubMed Abstract: 
  • Hantaviruses can cause hemorrhagic fever with a renal syndrome and hantavirus pulmonary syndrome when transmitted to humans. The nucleocapsid protein of hantaviruses encapsidates viral genomic RNA and associates with transcription and replication com ...

    Hantaviruses can cause hemorrhagic fever with a renal syndrome and hantavirus pulmonary syndrome when transmitted to humans. The nucleocapsid protein of hantaviruses encapsidates viral genomic RNA and associates with transcription and replication complexes. Both the amino and carboxy termini of the nucleocapsid protein had been predicted to form trimers prior to the formation of the ribonucleoprotein. Crystal structures of amino-terminal fragments of the nucleocapsid protein showed the formation of intramolecular antiparallel coiled coils, but not intermolecular trimers. Thus, the amino-terminal part of the nucleocapsid protein is probably insufficient to initiate the trimerization of the full-length molecule.


    Related Citations: 
    • Design and crystal structure of bacteriophage T4 mini-fibritin NCCF
      Boudko, S.P.,Strelkov, S.V.,Engel, J.,Stetefeld, J.
      (2004) J.Mol.Biol. 339: 927
    • Structure formation in the C terminus of type III collagen guides disulfide cross-linking
      Boudko, S.P.,Engel, J.
      (2004) J.Mol.Biol. 335: 1289


    Organizational Affiliation

    Department of Biological Sciences, Purdue University, West Lafayette, IN 47907-2054, USA.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Fibritin
A
130Enterobacteria phage Ox2Gene Names: wac
Find proteins for Q38650 (Enterobacteria phage Ox2)
Go to UniProtKB:  Q38650
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.32 Å
  • R-Value Free: 0.170 
  • R-Value Work: 0.160 
  • Space Group: P 63
Unit Cell:
Length (Å)Angle (°)
a = 53.677α = 90.00
b = 53.677β = 90.00
c = 106.458γ = 120.00
Software Package:
Software NamePurpose
HKL-2000data collection
PDB_EXTRACTdata extraction
SCALEPACKdata scaling
HKL-2000data reduction
AMoREphasing
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2007-02-27
    Type: Initial release
  • Version 1.1: 2008-05-01
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Derived calculations, Version format compliance
  • Version 1.3: 2014-09-10
    Type: Database references
  • Version 1.4: 2017-06-14
    Type: Database references, Source and taxonomy, Structure summary