2I6D

The structure of a putative RNA methyltransferase of the TrmH family from Porphyromonas gingivalis.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.235 
  • R-Value Work: 0.189 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

The structure of a putative RNA methyltransferase of the TrmH family from Porphyromonas gingivalis.

Cuff, M.E.Mussar, K.E.Li, H.Moy, S.Joachimiak, A.Midwest Center for Structural Genomics (MCSG)

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
RNA methyltransferase, TrmH family
A
257Porphyromonas gingivalis (strain ATCC BAA-308 / W83)Mutation(s): 0 
Find proteins for Q7MW92 (Porphyromonas gingivalis (strain ATCC BAA-308 / W83))
Go to UniProtKB:  Q7MW92
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ACY
Query on ACY

Download SDF File 
Download CCD File 
A
ACETIC ACID
C2 H4 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.235 
  • R-Value Work: 0.189 
  • Space Group: C 2 2 21
Unit Cell:
Length (Å)Angle (°)
a = 41.921α = 90.00
b = 107.119β = 90.00
c = 120.352γ = 90.00
Software Package:
Software NamePurpose
DMphasing
RESOLVEphasing
SBC-Collectdata collection
HKL-2000data reduction
MLPHAREphasing
Omodel building
REFMACrefinement
SOLVEphasing
HKL-2000data scaling
CCP4phasing
HKL-3000phasing
Cootmodel building
SHELXDphasing
ARP/wARPmodel building
SHELXEmodel building

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2006-10-17
    Type: Initial release
  • Version 1.1: 2008-05-01
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Advisory, Derived calculations, Source and taxonomy, Version format compliance