2I2O

Crystal Structure of an eIF4G-like Protein from Danio rerio


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.92 Å
  • R-Value Free: 0.235 
  • R-Value Work: 0.190 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal structure of an eIF4G-like protein from Danio rerio.

Bae, E.Bitto, E.Bingman, C.A.McCoy, J.G.Wesenberg, G.E.Phillips, G.N.

(2010) Proteins 78: 1803-1806


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
eIF4G-like protein
A, B
224Danio rerioMutation(s): 0 
Gene Names: mif4gdb
Find proteins for Q5EAQ1 (Danio rerio)
Go to UniProtKB:  Q5EAQ1
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NI
Query on NI

Download SDF File 
Download CCD File 
A, B
NICKEL (II) ION
Ni
VEQPNABPJHWNSG-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.92 Å
  • R-Value Free: 0.235 
  • R-Value Work: 0.190 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 317.796α = 90.00
b = 40.948β = 90.26
c = 40.917γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
SHARPphasing
DMphasing
HKLdata processing
PHENIXphasing
ARP/wARPmodel building
HKLdata scaling
PDB_EXTRACTdata extraction
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2006-08-29
    Type: Initial release
  • Version 1.1: 2008-05-01
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance