2I0X | pdb_00002i0x

Hypothetical protein PF1117 from Pyrococcus furiosus

PDB DOI: https://doi.org/10.2210/pdb2I0X/pdb

Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Organism(s): Pyrococcus furiosus
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2006-08-11 Released: 2006-10-10
Deposition Author(s): Chen, L.Q., Fu, Z.-Q., Liu, Z.-J., Rose, J.P., Wang, B.C., Southeast Collaboratory for Structural Genomics (SECSG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.70 Å
R-Value Free:
0.305 (Depositor)
R-Value Work:
0.261 (Depositor), 0.280 (DCC)
R-Value Observed:
0.261 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.4 of the entry. See complete history.

Literature

Crystal Structure of Hypothetical Protein Pf1117 from Pyrococcus furiosus

Chen, L.Q., Fu, Z.-Q., Hwang, J., Chang, J., Chen, L., Wang, Y., Zhang, H., Liu, Z.-J., Rose, J.P., Wang, B.C., Southeast Collaboratory for Structural Genomics

To be published.

Macromolecule Content

Total Structure Weight: 9.99 kDa
Atom Count: 709
Modeled Residue Count: 84
Deposited Residue Count: 85
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hypothetical protein PF1117	A	85	Pyrococcus furiosus	Mutation(s): 0 Gene Names: ORF 1117 EC: 3.1
UniProt
Find proteins for Q8U1T8 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)) Explore Q8U1T8 Go to UniProtKB: Q8U1T8
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q8U1T8
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.70 Å
R-Value Free: 0.305 (Depositor)
R-Value Work: 0.261 (Depositor), 0.280 (DCC)
R-Value Observed: 0.261 (Depositor)

Space Group: P 4₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 48.203	α = 90
b = 48.203	β = 90
c = 84.272	γ = 90

Software Package:

Software Name	Purpose
SGXPRO	model building
CNS	refinement
SERGUI	data collection
HKL-2000	data reduction
HKL-2000	data scaling
SGXPRO	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2006-10-10

Deposition Author(s):

Southeast Collaboratory for Structural Genomics (SECSG)

Revision History (Full details and data files)

Version 1.0: 2006-10-10
Type: Initial release
Version 1.1: 2008-05-01
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Derived calculations, Version format compliance
Version 1.3: 2017-09-13
Changes: Refinement description
Version 1.4: 2024-02-21
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.