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Download EndnoteCrystal structure of Diaminohydroxyphosphoribosylaminopyrimidine deaminase/ 5-amino-6-(5-phosphoribosylamino)uracil reductase (TM1828) from Thermotoga maritima at 1.80 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
2HXV
Crystal structure of a diaminohydroxyphosphoribosylaminopyrimidine deaminase/ 5-amino-6-(5-phosphoribosylamino)uracil reductase (tm1828) from thermotoga maritima at 1.80 A resolution
- DOI: 10.2210/pdb2HXV/pdb
- Classification: BIOSYNTHETIC PROTEIN
- Organism(s): Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
- Expression System: Escherichia coli
- Deposited: 2006-08-04 Released: 2006-08-15
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.8 Å
- R-Value Free: 0.195
- R-Value Work: 0.160
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| Diaminohydroxyphosphoribosylaminopyrimidine deaminase/ 5-amino-6-(5-phosphoribosylamino)uracil reductase | A | 360 | Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) | Mutation(s): 0 |
Find proteins for Q9X2E8 (Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)) Go to UniProtKB: Q9X2E8 | ||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ZN Query on ZN | A | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | Ligand Interaction | |
| CL Query on CL | A | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | Ligand Interaction | |
| GOL Query on GOL | A | GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | Ligand Interaction | |
| NDP Query on NDP | A | NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE C21 H30 N7 O17 P3 ACFIXJIJDZMPPO-NNYOXOHSSA-N |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.8 Å
- R-Value Free: 0.195
- R-Value Work: 0.160
- Space Group: I 4 2 2
- Diffraction Data DOI:
10.18430/M32HXV Protein Diffraction
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 104.180 | α = 90.00 |
| b = 104.180 | β = 90.00 |
| c = 145.890 | γ = 90.00 |
| Software Name | Purpose |
|---|---|
| MolProbity | model building |
| SHARP | phasing |
| SHELX | phasing |
| PDB_EXTRACT | data extraction |
| XSCALE | data scaling |
| XDS | data reduction |
| REFMAC | refinement |
Entry History
Deposition Data
- Deposited Date: 2006-08-04
- Released Date: 2006-08-15
- Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History
- Version 1.0: 2006-08-15
Type: Initial release - Version 1.1: 2008-05-01
Type: Version format compliance - Version 1.2: 2011-07-13
Type: Advisory, Derived calculations, Version format compliance - Version 1.3: 2017-10-18
Type: Refinement description - Version 1.4: 2017-10-25
Type: Author supporting evidence
