2HRB | pdb_00002hrb

Crystal Structure of human Carbonyl Reductase 3, complexed with NADP+

• PDB DOI: https://doi.org/10.2210/pdb2HRB/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2006-07-20 Released: 2006-08-08 
• Deposition Author(s): Pilka, E.S., Structural Genomics Consortium (SGC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.90 Å
• R-Value Free: 
  0.264 (Depositor), 0.240 (DCC) 
• R-Value Work: 
  0.212 (Depositor), 0.190 (DCC) 
• R-Value Observed: 
  0.215 (Depositor) 

Starting Model: experimental

Literature

Crystal Structure of human Carbonyl Reductase 3, complexed with NADP+

Pilka, E.S., Rojkova, A., Kavanagh, K.L., Niesen, F., Sundstrom, M., Arrowsmith, C., Weigelt, J., Edwards, A., Oppermann, U.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 31.56 kDa 
• Atom Count: 2,470 
• Modeled Residue Count: 273 
• Deposited Residue Count: 274 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Carbonyl reductase [NADPH] 3	A	274	Homo sapiens	Mutation(s): 0  EC: 1.1.1.184 (PDB Primary Data), 1.6.5.10 (UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for O75828 (Homo sapiens) Explore O75828  Go to UniProtKB:  O75828
PHAROS:  O75828 GTEx:  ENSG00000159231

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
NAP	B [auth A]	NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE C21 H28 N7 O17 P3 XJLXINKUBYWONI-NNYOXOHSSA-N
GOL	C [auth A], D [auth A], E [auth A]	GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.90 Å
• R-Value Free:  0.264 (Depositor), 0.240 (DCC) 
• R-Value Work:  0.212 (Depositor), 0.190 (DCC) 
• R-Value Observed: 0.215 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 56.356	α = 90
b = 60.14	β = 90
c = 88.117	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
MOSFLM	data reduction
CCP4	data scaling
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2006-08-08 
Deposition Author(s): Pilka, E.S., Structural Genomics Consortium (SGC)

Revision History  

• Version 1.0: 2006-08-08
  Type: Initial release
  
• Version 1.1: 2007-12-18
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Advisory, Version format compliance
• Version 1.3: 2023-10-25
  Changes: Data collection, Database references, Derived calculations, Refinement description