2HLZ

Crystal Structure of human ketohexokinase

DOI: 10.2210/pdb2HLZ/pdb

Classification: TRANSFERASE
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2006-07-10 Released: 2006-08-08
Deposition Author(s): Rabeh, W.M., Tempel, W., Nedyalkova, L., Landry, R., Arrowsmith, C.H., Edwards, A.M., Sundstrom, M., Weigelt, J., Bochkarev, A., Park, H., Structural Genomics Consortium (SGC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.85 Å
R-Value Free: 0.249
R-Value Work: 0.214

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Crystal Structure of human ketohexokinase (CASP Target)

Rabeh, W.M., Tempel, W., Nedyalkova, L., Landry, R., Arrowsmith, C.H., Edwards, A.M., Sundstrom, M., Weigelt, J., Bochkarev, A., Park, H.

To be published.

Macromolecules

Find similar proteins by:

(by identity cutoff) | Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Ketohexokinase	A, B, C, D	312	Homo sapiens	Mutation(s): 3 Gene Names: KHK EC: 2.7.1.3
Find proteins for P50053 (Homo sapiens) Explore P50053 Go to UniProtKB: P50053
NIH Common Fund Data Resources
PHAROS: P50053 GTEx: ENSG00000138030
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
UNX Query on UNX Download Ideal Coordinates CCD File SDF format, chain AA [C] SDF format, chain BA [C] SDF format, chain CA [D] SDF format, chain DA [D] SDF format, chain E [A] SDF format, chain EA [D] SDF format, chain F [A] SDF format, chain FA [D] SDF format, chain G [A] SDF format, chain GA [D] SDF format, chain H [A] SDF format, chain HA [D] SDF format, chain I [A] SDF format, chain IA [D] SDF format, chain J [A] SDF format, chain JA [D] SDF format, chain K [A] SDF format, chain L [A] SDF format, chain M [B] SDF format, chain N [B] SDF format, chain O [B] SDF format, chain P [B] SDF format, chain Q [B] SDF format, chain R [B] SDF format, chain S [B] SDF format, chain T [B] SDF format, chain U [C] SDF format, chain V [C] SDF format, chain W [C] SDF format, chain X [C] SDF format, chain Y [C] SDF format, chain Z [C] MOL2 format, chain AA [C] MOL2 format, chain BA [C] MOL2 format, chain CA [D] MOL2 format, chain DA [D] MOL2 format, chain E [A] MOL2 format, chain EA [D] MOL2 format, chain F [A] MOL2 format, chain FA [D] MOL2 format, chain G [A] MOL2 format, chain GA [D] MOL2 format, chain H [A] MOL2 format, chain HA [D] MOL2 format, chain I [A] MOL2 format, chain IA [D] MOL2 format, chain J [A] MOL2 format, chain JA [D] MOL2 format, chain K [A] MOL2 format, chain L [A] MOL2 format, chain M [B] MOL2 format, chain N [B] MOL2 format, chain O [B] MOL2 format, chain P [B] MOL2 format, chain Q [B] MOL2 format, chain R [B] MOL2 format, chain S [B] MOL2 format, chain T [B] MOL2 format, chain U [C] MOL2 format, chain V [C] MOL2 format, chain W [C] MOL2 format, chain X [C] MOL2 format, chain Y [C] MOL2 format, chain Z [C]	A, B, C, D	UNKNOWN ATOM OR ION X		Ligand Interaction

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A,B,C,D	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.85 Å
R-Value Free: 0.249
R-Value Work: 0.214
Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 66.933	α = 105.06
b = 71.672	β = 107.33
c = 82.694	γ = 93.09

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
SOLVE	phasing
RESOLVE	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction
ARP/wARP	model building
MolProbity	model building