2HJM | pdb_00002hjm

Crystal structure of a singleton protein PF1176 from P. furiosus

PDB DOI: https://doi.org/10.2210/pdb2HJM/pdb

Classification: structural genomics, unknown function
Organism(s): Pyrococcus furiosus
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2006-06-30 Released: 2007-07-03
Deposition Author(s): Chen, L.Q., Liu, Z.-J., Rose, J.P., Wang, B.-C., Southeast Collaboratory for Structural Genomics (SECSG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.90 Å
R-Value Free:
0.279 (Depositor)
R-Value Work:
0.228 (Depositor), 0.222 (DCC)
R-Value Observed:
0.230 (Depositor)

wwPDB Validation 3D Report Full Report

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This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of a singleton protein PF1176 from P. furiosus

Rose, J.P., Liu, Z.-J., Wang, B.-C.

To be published.

Macromolecule Content

Total Structure Weight: 48.17 kDa
Atom Count: 2,587
Modeled Residue Count: 362
Deposited Residue Count: 412
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hypothetical protein PF1176	A, B, C, D	103	Pyrococcus furiosus	Mutation(s): 2 Gene Names: pf1176
UniProt
Find proteins for Q8U1N0 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)) Explore Q8U1N0 Go to UniProtKB: Q8U1N0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8U1N0
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B, C, D	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.90 Å
R-Value Free: 0.279 (Depositor)
R-Value Work: 0.228 (Depositor), 0.222 (DCC)
R-Value Observed: 0.230 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 62.68	α = 90
b = 64.24	β = 90
c = 111.65	γ = 90

Software Package:

Software Name	Purpose
SCA2STRUCTURE	model building
CNS	refinement
HKL-2000	data reduction
HKL-2000	data scaling
SCA2STRUCTURE	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2007-07-03

Deposition Author(s):

Southeast Collaboratory for Structural Genomics (SECSG)

Revision History (Full details and data files)

Version 1.0: 2007-07-03
Type: Initial release
Version 1.1: 2008-05-01
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Derived calculations, Version format compliance
Version 1.3: 2024-11-06
Changes: Data collection, Database references, Derived calculations, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.