Download MendeleyCrystal structure of hypothetical protein (np_249484.1) from Pseudomonas aeruginosa at 1.95 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
2H9F
CRYSTAL STRUCTURE OF a PrpF family methylaconitate isomerase (PA0793) FROM PSEUDOMONAS AERUGINOSA AT 1.95 A RESOLUTION
- PDB DOI: https://doi.org/10.2210/pdb2H9F/pdb
- Classification: ISOMERASE
- Organism(s): Pseudomonas aeruginosa
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2006-06-09 Released: 2006-08-08
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.95 Å
- R-Value Free: 0.196
- R-Value Work: 0.168
- R-Value Observed: 0.169
wwPDB Validation 3D Report Full Report
This is version 1.5 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Hypothetical protein | 396 | Pseudomonas aeruginosa | Mutation(s): 10 Gene Names: np_249484.1 |  | |
UniProt | |||||
Find proteins for Q9I5E5 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)) Explore Q9I5E5 Go to UniProtKB: Q9I5E5 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9I5E5 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | E [auth A], F [auth A], G [auth A], H [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| GOL Query on GOL | I [auth A], J [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| CO Query on CO | B [auth A] | COBALT (II) ION Co XLJKHNWPARRRJB-UHFFFAOYSA-N |  | ||
| CL Query on CL | C [auth A], D [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.95 Å
- R-Value Free: 0.196
- R-Value Work: 0.168
- R-Value Observed: 0.169
- Space Group: I 41 2 2
- Diffraction Data: https://doi.org/10.18430/M32H9F
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 148.69 | α = 90 |
| b = 148.69 | β = 90 |
| c = 141.085 | γ = 90 |
| Software Name | Purpose |
|---|---|
| MolProbity | model building |
| REFMAC | refinement |
| XSCALE | data scaling |
| PDB_EXTRACT | data extraction |
| XDS | data reduction |
| SHELXD | phasing |
| autoSHARP | phasing |
Entry History
Deposition Data
- Released Date: 2006-08-08 Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History (Full details and data files)
- Version 1.0: 2006-08-08
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Advisory, Derived calculations, Version format compliance - Version 1.3: 2017-10-18
Changes: Refinement description - Version 1.4: 2023-01-25
Changes: Database references, Derived calculations - Version 1.5: 2024-10-30
Changes: Data collection, Structure summary
