2H18 | pdb_00002h18

Structure of human ADP-ribosylation factor-like 10B (ARL10B)

• PDB DOI: https://doi.org/10.2210/pdb2H18/pdb

• Classification: TRANSPORT PROTEIN
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 
• Membrane Protein: Yes  OPM


• Deposited: 2006-05-16 Released: 2006-06-13 
• Deposition Author(s): Atanassova, A., Tempel, W., Dimov, S., Yaniw, D., Arrowsmith, C.H., Edwards, A.M., Sundstrom, M., Weigelt, J., Bochkarev, A., Park, H., Structural Genomics Consortium (SGC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.90 Å
• R-Value Free: 
  0.241 (Depositor), 0.292 (DCC) 
• R-Value Work: 
  0.201 (Depositor), 0.246 (DCC) 

Starting Model: experimental

Literature

Structure of human ADP-ribosylation factor-like 10B (ARL10B)

Atanassova, A., Tempel, W., Dimov, S., Yaniw, D., Arrowsmith, C.H., Edwards, A.M., Sundstrom, M., Weigelt, J., Bochkarev, A., Park, H., Structural Genomics Consortium (SGC)

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 22.5 kDa 
• Atom Count: 1,479 
• Modeled Residue Count: 174 
• Deposited Residue Count: 193 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
ADP-ribosylation factor-like protein 8A	A	193	Homo sapiens	Mutation(s): 0  Gene Names: ARL8A, ARL10B, GIE2 Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for Q96BM9 (Homo sapiens) Explore Q96BM9  Go to UniProtKB:  Q96BM9
PHAROS:  Q96BM9 GTEx:  ENSG00000143862

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
GDP	B [auth A]	GUANOSINE-5'-DIPHOSPHATE C10 H15 N5 O11 P2 QGWNDRXFNXRZMB-UUOKFMHZSA-N
UNX	C [auth A], D [auth A], E [auth A], F [auth A], G [auth A]	UNKNOWN ATOM OR ION X

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.90 Å
• R-Value Free:  0.241 (Depositor), 0.292 (DCC) 
• R-Value Work:  0.201 (Depositor), 0.246 (DCC) 

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 39.406	α = 90
b = 66.46	β = 117.54
c = 39.646	γ = 90

Software Package:

Software Name	Purpose
PHASER	phasing
DENZO	data reduction
SCALEPACK	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction

Structure Validation

Entry History 

Deposition Data

• Released Date: 2006-06-13 
Deposition Author(s): Atanassova, A., Tempel, W., Dimov, S., Yaniw, D., Arrowsmith, C.H., Edwards, A.M., Sundstrom, M., Weigelt, J., Bochkarev, A., Park, H., Structural Genomics Consortium (SGC)

Revision History  

• Version 1.0: 2006-06-13
  Type: Initial release
  
• Version 1.1: 2008-05-01
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Advisory, Version format compliance
• Version 1.3: 2017-10-18
  Changes: Refinement description
• Version 1.4: 2023-08-30
  Changes: Data collection, Database references, Derived calculations, Refinement description